Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1904 ATGTCACGAATCTTCTCGAGATGGAAGAAGGTGAAGGAAGTGGCGTCACTCTCCGACACCCATTTGGTCGATTCTCCGGTTAACATGACCCGAATTCGGAACCGAACCGGTTTGAATTACCGATTCAACCGTGTGCGCCCAATCTCGACCCATCTGAATCACCATATCCACATCACTGGCGGGGTCGGACATCATCGCCGGCGGGAGGCACTCGTCGGAGTTCAGGAGCGGTACAAATGGGACCGGGGTGGATCCGATGACAACCCGATCCGGAAGATTCGGGCAGAGGCAAACTGCCCGCGTTGCAGCAAGGACATGAACCTCGTATTCTCCAATCGCCATTTTCCGACCACATCAGCTTCTGATTCTGATTCAGGTTCTGGTTCGAGTTTGGCGCTACATGTTCCTGTGAATGGTGGTGGAGAAGGTGGTAGTGCTGGTTACCAAGCGGTGAATCTGTGTCCAACTTGCAAAACCGCTTATTACTTTAAACCTTTCAGCACTTCACCATTGCAAGGTACCTTTGTGGAGATTGGGAGGGTAACTAATAGTGGCAGCAATGGCAATGGCAATGGCAATGGCAGTGGCAAATCTCAATCTTCTAGGAGGATCACACATGGGAAGAATGTTGGTGGTGGTAAAGAGGGTGGTGGAAATAGTAGTGGTCATGGTGGTGGTGATGGTGAAGATTATGGTTCTAAGAATGGTGGTGGTGGTAGCTGGCTTGAGGCTTCATTGTGGGACACTTTAAGGTCCTACAATGGTGGTGGTGGTGGTAATAGTGGGGAGCCACCTGAGGTATGGCCTCCACCACCAGGTGGTAACAATGTGAATGGTTTGGCTGTTCATAATCCTCCAGGGCCGCCTTTCATGCATGGGATGAATATCCGTGCTCCGGGGTCCCGGGAAGGTGGCTCTGGCGGTAGAGGTGGAGGTGGCGGAAATGAAGAAAAGACTTCTTGGGGAGGGTCTAATTTGGGTAAGGATTTGCCATCCCCAAAGGAGATTTGTAAGGGACTTGACAAGTTTGTAATTGGACAAGAGAGAGCTAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCACTCCACTTTGCAGAAAGGGTCAGGGGCAGATCCTGGAGTTTCAGAGGGGTTAGATGATGACGATAATGTTGAGCTAGAAAAGAGTAATGTTCTTCTCATGGGTCCAACAGGATCAGGGAAGACGCTACTCGCGAAAACACTAGCTAGATTTGTGAATGTTCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATACTGTACAAACTACTTGCGGCAGCAGACTTCAATGTTGCAGCAGCTCAACAAGGGATAATTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGCTTAAATATCAGCCGGGATGTTTCTGGCGAGGGTGTTCAGCAGGCATTATTAAAAATGCTTGAAGGAACTATAGTAAATGTTCCTGAGAAAGGGGCTAGGAAGCATCCGCGGGGTGATAACATACAGATGGACACAAAGAATATTCTTTTCATTTGTGGCGGAGCATTTATTGATCTTGAAAAGACAATTTCAGAGAGACGGCAAGATTCTTCTATTGGTTTTGGAGCCCCAGTTCGTGCCAACATGAGAGCTGGTGGAATAATTGATGCTGTACTAACATCATCTTTACTTGAGTCGGTGGAGAGTTCCGATCTTATTGCATATGGTCTCATACCAGAGTTTATTGGACGATTTCCCATCTTAGTGAGCTTGACAGCTTTAACTGAAGAGCAACTTATGCTGGTCCTATCAGAACCAAAGAATGCTCTTGGAAAGCAGTACAAGAAATTATTCAGCATGAATGATGTAAAGCTACACTTCACAGATAAAGCTCTCAGACTGATTGCACAGAAAGCAATGGCCAAAAATACCGGTGCCAGAGGTTTAAGAGCTCTACTCGAAAGTATTTTAACCGACACAATGTTTGAGGTTCCAGAACTTAAGACCGGAGATGAACGAATCGATGCAGTAGTTGTTGATGAAGAGTCAGTAGGATCAATAAACGCCCCTGGATGTGGAGGAAAAATTCTTCGTGGAGACAATGCTTTGGAGAAATACCTCGCTAAGATGAAGGATTCACAGGAAAATGTTAACTTAGCTGAATCAGACTCACAAGATGGAGATTCAGAGCTTTCATCAAGGGCCATGAGCTTGTAA 2247 0.4611 MSRIFSRWKKVKEVASLSDTHLVDSPVNMTRIRNRTGLNYRFNRVRPISTHLNHHIHITGGVGHHRRREALVGVQERYKWDRGGSDDNPIRKIRAEANCPRCSKDMNLVFSNRHFPTTSASDSDSGSGSSLALHVPVNGGGEGGSAGYQAVNLCPTCKTAYYFKPFSTSPLQGTFVEIGRVTNSGSNGNGNGNGSGKSQSSRRITHGKNVGGGKEGGGNSSGHGGGDGEDYGSKNGGGGSWLEASLWDTLRSYNGGGGGNSGEPPEVWPPPPGGNNVNGLAVHNPPGPPFMHGMNIRAPGSREGGSGGRGGGGGNEEKTSWGGSNLGKDLPSPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHSTLQKGSGADPGVSEGLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGIIDAVLTSSLLESVESSDLIAYGLIPEFIGRFPILVSLTALTEEQLMLVLSEPKNALGKQYKKLFSMNDVKLHFTDKALRLIAQKAMAKNTGARGLRALLESILTDTMFEVPELKTGDERIDAVVVDEESVGSINAPGCGGKILRGDNALEKYLAKMKDSQENVNLAESDSQDGDSELSSRAMSL* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1904 748 SMART AAA_5 393 589 IPR003593 -
Ahy5g1904 748 MobiDBLite consensus disorder prediction 182 206 - -
Ahy5g1904 748 Pfam C-terminal, D2-small domain, of ClpB protein 604 675 IPR019489 -
Ahy5g1904 748 Coils Coil 713 733 - -
Ahy5g1904 748 MobiDBLite consensus disorder prediction 724 748 - -
Ahy5g1904 748 CDD AAA 394 505 - -
Ahy5g1904 748 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 326 695 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Ahy5g1904 748 Pfam AAA domain (Cdc48 subfamily) 393 597 IPR003959 GO:0005524|GO:0016887
Ahy5g1904 748 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 49 235 - -
Ahy5g1904 748 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 296 747 - -
Ahy5g1904 748 MobiDBLite consensus disorder prediction 182 237 - -
Ahy5g1904 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 688 IPR027417 -
Ahy5g1904 748 SMART ClpB_D2_small_2 604 697 IPR019489 -
Ahy5g1904 748 Gene3D - 324 602 IPR027417 -
Ahy5g1904 748 Gene3D - 603 703 - -
Ahy5g1904 748 MobiDBLite consensus disorder prediction 252 332 - -
Ahy5g1904 748 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 49 235 - -
Ahy5g1904 748 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 296 747 - -
Ahy5g1904 748 MobiDBLite consensus disorder prediction 725 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1904 Ahy-Chr5 87275077 87280593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1904 397 496 Miscellaneous Gene Families AT3G02450 37.624 9.09e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1904 K03544 - gmx:100805340 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3383 15 156325412 156331018 Ahy5g1904 5 87275077 87280593 hybridization
Ahy5g1904 5 87275077 87280593 Ahy19g1916 19 110713218 110719626 PCT
Ahy5g1904 5 87275077 87280593 Ahy9g1555 9 83927255 83932821 PCT
Ahy19g1916 19 110713218 110719626 Ahy5g1904 5 87275077 87280593 PCT
Ahy9g1555 9 83927255 83932821 Ahy5g1904 5 87275077 87280593 PCT