Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2458 ATGTCGTCCTTCTTCACTCTGAGAAAATCCTCACCGTTAATCTACCGTTTCCCAATCCAACGGTCCTTCAAGATCCGCAACTCTTCAACAACCTCACCATCTTCCTCCTCCTCCTCCCCTTCGGCACCGTCTCTCCTGAATCGTAGTAGCAGTAGCACCAACCCGCACTACACTCCTCCGCGGGGCTCCGGTCTCGGTCCTAATTGGGCTTGGGCCCTTGCCGCGGGCTCAGGCCTTGGGGTTCTCCTGCATTACCTCGCTAAGCCCAATTCCCAATTCGACTCTCCGTTCTTATCGAAATTACTGCCTTTTGTTGACTCGTGGTCAACTCCTCCTGGCAACGAAGTTGAGTCTGACCGTCGTTCCACACCGTCGTTGTTTAGAAAACTGTCCCTTCCAGAAAGTTCTAGTTTCTTCCTTTTTGGAGATGCGTACAGAAGAAAGGTGTTTTTCAACTATGAGAAGCGGATACGGTTGCGAAGCCCACCCGAAAAGGTTTTTGAATACTTTGCATCTTATCGTACCCCAGAAGGAGAACTACTTATGAAACCAGCAGATCTAATGCGAGCAGTGGTTCCTGTTTTCCCTCCATCTGAATCCCATCTTGTAAGAGATGGGTACCTGAAAGGAGAAAGAAGTCCCGGTCATTTACGGTGTGCTCCTTCGGAATTTTTTATGCTTTTTGATGTAAATGGTGATGGGCTTATATCTTTCAAAGAGGAGATAAACAAGGAAGAATTCAAAAAAGTGATGGCATTGATGCGATCTCATCATCGACAAGGTGTTCAGCACAGAGATGGATTGCGAATTGGCCTAAAGGTGATTGATTCTGTGGAAAATGGAGGGATGTTGGAGTATTTCTTTGGTAAAGATGGAAATGAATGTCTCCAGCATGACAAATTCGTACAGTTTTTGAGAGATTTACATGAGGAAATTGTGAGGCTGGAGTTTTCTCATTATGACTACAAATCTCAAAAAACCATATCAGCCAAGGATTTTGGACTCTCCATGGTTGCTTCTGCCGACATAAGTCATCTAGACAAGTTGCTTGACCGGGTTGATCAGTTGGACAATGATCAACGTCTCAAGAATGTACGCATCACATTTGAAGAGTTTAAAAACTTTGCAGAGCTACGCAAAAAATTGTTGCCATTTTCATTGGCGCTTTTCAGTTGTGGAAAAGTAAATGGTCTATTAACCAGAGATGATTTTCAGCGAGCTGCATCACAAGTATGTGGCATATCTCTCTCTGACAACGTAGTTGACATTGTTTTCCATTTGTTTGATGCAAATTGGGACAGAAACCTAAGCGCAGATGAGTTTGTGAGAGTGTTACACAAGCGAGAAAGGGACATTGTACAGCCTGTGGAGGCAGGAATCTTTGGTTTCTTGTCATGTTGCTGGAACTGTACGGATAATCTATCACGCTTTCGGTTGTTTTAG 1443 0.4442 MSSFFTLRKSSPLIYRFPIQRSFKIRNSSTTSPSSSSSSPSAPSLLNRSSSSTNPHYTPPRGSGLGPNWAWALAAGSGLGVLLHYLAKPNSQFDSPFLSKLLPFVDSWSTPPGNEVESDRRSTPSLFRKLSLPESSSFFLFGDAYRRKVFFNYEKRIRLRSPPEKVFEYFASYRTPEGELLMKPADLMRAVVPVFPPSESHLVRDGYLKGERSPGHLRCAPSEFFMLFDVNGDGLISFKEEINKEEFKKVMALMRSHHRQGVQHRDGLRIGLKVIDSVENGGMLEYFFGKDGNECLQHDKFVQFLRDLHEEIVRLEFSHYDYKSQKTISAKDFGLSMVASADISHLDKLLDRVDQLDNDQRLKNVRITFEEFKNFAELRKKLLPFSLALFSCGKVNGLLTRDDFQRAASQVCGISLSDNVVDIVFHLFDANWDRNLSADEFVRVLHKRERDIVQPVEAGIFGFLSCCWNCTDNLSRFRLF* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2458 480 Gene3D - 219 338 - -
Ahy6g2458 480 Pfam EF-hand domain pair 397 445 IPR002048 GO:0005509
Ahy6g2458 480 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 241 477 - -
Ahy6g2458 480 SUPERFAMILY EF-hand 317 449 IPR011992 -
Ahy6g2458 480 MobiDBLite consensus disorder prediction 26 59 - -
Ahy6g2458 480 Gene3D - 339 458 - -
Ahy6g2458 480 SUPERFAMILY EF-hand 223 333 IPR011992 -
Ahy6g2458 480 CDD EFh_MICU 225 448 - -
Ahy6g2458 480 MobiDBLite consensus disorder prediction 26 61 - -
Ahy6g2458 480 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 242 - -
Ahy6g2458 480 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 242 IPR039800 GO:0005509|GO:0006851
Ahy6g2458 480 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 241 477 IPR039800 GO:0005509|GO:0006851
Ahy6g2458 480 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2458 Ahy-Chr6 109254967 109259068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2458 51 413 EF-hand Containing Proteins AT4G32060 59.079 2.94e-148 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2458 K22827 - gmx:100806575 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3159 16 147822922 147827174 Ahy6g2458 6 109254967 109259068 hybridization
Ahy6g2458 6 109254967 109259068 Ahy18g2742 18 130927112 130931717 PCT
Ahy6g2458 6 109254967 109259068 Ahy8g2482 8 47556295 47561777 PCT
Ahy18g2742 18 130927112 130931717 Ahy6g2458 6 109254967 109259068 PCT
Ahy8g2482 8 47556295 47561777 Ahy6g2458 6 109254967 109259068 PCT