Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3159 ATGTCGTCCTTCTTCACTCTCAGAAAATCCTCACCGTTAATCTACCGTTTCCCAATCCAACGGTCCTTCAAGATCCGCAACTCTTCAACAACCTCACCATCGTCCTCCTCCTCCCCTTCGGCACCGTCTCTCCTGAATCGTAGCAGCAGTAGCACCAACCCGCACTACACTCCTCCGCGGGGCTCCGGTCTCGGTCCTAATTGGGCTTGGGCCCTTGCCGCGGGCTCAGGCCTTGGGGTTCTCCTGCATTACCTCGCTAAGCCCAATTCCCAATTCGACTCTCCGTTCTTATCGAAATTACTGCCTTTTGTTGACTCGTGGTCAACTCCTCCTGGCAACGAAGTTGAGTCTGACCGTCGGTCCACACCGTCGTTGTTTACAAAACTGTCCCTTCCAGAAAGTTCTAGTTTCTTCCTTTTTGGAGATGCGTACAGAAGAAAGGTGTTTTTCAACTATGAGAAGCGGATACGGTTGCGAAGCCCACCCGAAAAGGTTTTTGAATACTTTGCTTCTTATCGTACCCCAGAAGGAGAACTACTTATGAAACCAGCGGATCTAATGCGAGCAGTGGTTCCTGTTTTCCCCCCATCTGAATCCCATCTTGTAAGAGATGGGTACCTGAAAGGAGAAAGAAGTCCCGGTCATTTACGGTGTGCTCCTTCGGAATTTTTTATGCTTTTTGATGTAAATGGTGATGGGCTTATATCTTTCAAAGAGGAGATAAACAAGGAAGAATTCAAAAAAGTGATGGCATTGATGCGATCTCATCATCGACAAGGTGTTCAGCACAGAGATGGATTGCGAATTGGCCTAAAGGTGATTGATTCTGTGGAAAATGGAGGGATGTTGGAGTATTTCTTTGGTAAAGATGGAAATGAATGTCTCCAGCATGACAAATTCGTACAGTTTTTGAGAGATTTACATGAGGAAATCGTGAGGCTGGAGTTTTCTCATTATGACTACAAATCTCAAAAAACCATATCAGCCAAGGATTTTGGACTCTCCATGGTTGCTTCTGCTGACATAAGTCATCTAGACAAGTTGCTTGACCGGGTTGATCAGTTGGACAATGATCAACGTCTCAAGAATGTACGCATCACATTTGAAGAGTTTAAAAACTTTGCAGAGCTACGCAAAAAATTGTTACCATTTTCATTGGCGCTTTTCAGTTGTGGAAAAGTAAATGGTCTATTAACCAGAGATGATTTTCAGCGAGCTGCATCACAAGTATGTGGCATCTCTCTCTCTGACAACGTAGTTGACATTGTTTTCCATTTGTTTGATGCAAATTGGGACAGAAACCTAAGCGCAGATGAGTTTGTGAGAGTGTTACACAAGCGAGAAAGGGACATTGTACAGCCTGTGGAGGCAGGAATCTTTGGTTTCTTGTCTTGTTGCTGGAACTGTACGGATAATCTATCACGCTTTCGGTTGTTTTAG 1440 0.4472 MSSFFTLRKSSPLIYRFPIQRSFKIRNSSTTSPSSSSSPSAPSLLNRSSSSTNPHYTPPRGSGLGPNWAWALAAGSGLGVLLHYLAKPNSQFDSPFLSKLLPFVDSWSTPPGNEVESDRRSTPSLFTKLSLPESSSFFLFGDAYRRKVFFNYEKRIRLRSPPEKVFEYFASYRTPEGELLMKPADLMRAVVPVFPPSESHLVRDGYLKGERSPGHLRCAPSEFFMLFDVNGDGLISFKEEINKEEFKKVMALMRSHHRQGVQHRDGLRIGLKVIDSVENGGMLEYFFGKDGNECLQHDKFVQFLRDLHEEIVRLEFSHYDYKSQKTISAKDFGLSMVASADISHLDKLLDRVDQLDNDQRLKNVRITFEEFKNFAELRKKLLPFSLALFSCGKVNGLLTRDDFQRAASQVCGISLSDNVVDIVFHLFDANWDRNLSADEFVRVLHKRERDIVQPVEAGIFGFLSCCWNCTDNLSRFRLF* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3159 479 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Ahy16g3159 479 MobiDBLite consensus disorder prediction 26 58 - -
Ahy16g3159 479 CDD EFh_MICU 224 447 - -
Ahy16g3159 479 Gene3D - 218 337 - -
Ahy16g3159 479 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 241 IPR039800 GO:0005509|GO:0006851
Ahy16g3159 479 Gene3D - 338 457 - -
Ahy16g3159 479 MobiDBLite consensus disorder prediction 26 60 - -
Ahy16g3159 479 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 239 476 - -
Ahy16g3159 479 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 241 - -
Ahy16g3159 479 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 239 476 IPR039800 GO:0005509|GO:0006851
Ahy16g3159 479 Pfam EF-hand domain pair 396 444 IPR002048 GO:0005509
Ahy16g3159 479 SUPERFAMILY EF-hand 314 447 IPR011992 -
Ahy16g3159 479 SUPERFAMILY EF-hand 222 332 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3159 Ahy-Chr16 147822922 147827174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3159 50 412 EF-hand Containing Proteins AT4G32060 59.079 1.78e-148 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3159 K22827 - gmx:100806575 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3159 16 147822922 147827174 Ahy16g3159 16 147822922 147827174 ECH
Ahy16g3159 16 147822922 147827174 Ahy6g2458 6 109254967 109259068 hybridization
Ahy16g3159 16 147822922 147827174 Ahy18g2742 18 130927112 130931717 PCT
Ahy16g3159 16 147822922 147827174 Ahy8g2482 8 47556295 47561777 PCT
Ahy18g2742 18 130927112 130931717 Ahy16g3159 16 147822922 147827174 PCT
Ahy8g2482 8 47556295 47561777 Ahy16g3159 16 147822922 147827174 PCT