Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2742 ATGCGTTTGCATAGTCCTCCCGAGAAGGTATTTGAATACTTTGCATCATGCCGGAGTCCGGAAGGAGAGGTGCTGATGGAGGCAGCAGACCTAATGAGAGCAGTGGTTGCGGTGTTCCCGCCGTCGGAGTCGAATGTTGTGAGGGAAGGATACTTGAAAGGTGAAAGAAGAAGTCCAGGCCACCTTCGTTGTCCCCCTTCTCTGTTTTTCATGCTCTTTGATGTCAACAATGATGGCCTTATATCTTTCAACGAGTATATCTTTTTGGTAACACTACTTAGCATACCAGAATCAAGTTTTTCTGCGGCATTTAAAATGTTTGACATGGATAACGATGGGGAGATAGATAAGGAAGAATTCAAGAAAGTGATGGAATTGATGCGATCTCATAATAGTTATAGACAAGGTGCTCATCACCATAGGGATGGAATGAGAAAAGGCTCAAAGGTCAATGATGATTGTGTAGAAAATGGAGGTGTTTTGGAATATTTTTTTGGCAAAGATGGAAAGGGACGCCTTAGCATTCATAGATTCTTGCAATTTATGAGAGACTTGCATCATGAAATACTAAGGCTGGAGTTTGATCATTATGACTACAAATCAAGAAAAACTATATCTGCCAAGGACTTTGCTCTCTCAATAGTTGCATCTGCTGATCTGAGTCATCTGGAGCTAAGGAAAAAATTGCTTCCATTTTCATTGGCCATTATTGGTTTTGCAAAAGTGAATGGCTTGTTAAGAAGAGAAGATTTTCAGCGAGCTGCATCACATGTTTGTGGATTATCACTTTCTGATAACGTGGTTAAGATTGTTTACCATTTGTTTGACACAAATGGGGATGGACACTTAAGTTCAGATGAGTTTGTAAGAGTGCTACACAACAAAGAAAATGATATCGCTCAACCTATGGAGACAGGGATCTTGCGTTTCTTGTCTTGCTGTTGGAACTGTAAGCATAGCTTCCCATACTCGCGCTTGTTTTCTTAG 987 0.4073 MRLHSPPEKVFEYFASCRSPEGEVLMEAADLMRAVVAVFPPSESNVVREGYLKGERRSPGHLRCPPSLFFMLFDVNNDGLISFNEYIFLVTLLSIPESSFSAAFKMFDMDNDGEIDKEEFKKVMELMRSHNSYRQGAHHHRDGMRKGSKVNDDCVENGGVLEYFFGKDGKGRLSIHRFLQFMRDLHHEILRLEFDHYDYKSRKTISAKDFALSIVASADLSHLELRKKLLPFSLAIIGFAKVNGLLRREDFQRAASHVCGLSLSDNVVKIVYHLFDTNGDGHLSSDEFVRVLHNKENDIAQPMETGILRFLSCCWNCKHSFPYSRLFS* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2742 328 Gene3D - 7 183 - -
Ahy18g2742 328 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 224 327 - -
Ahy18g2742 328 Pfam EF-hand domain pair 248 292 IPR002048 GO:0005509
Ahy18g2742 328 Pfam EF-hand domain pair 70 91 IPR002048 GO:0005509
Ahy18g2742 328 SUPERFAMILY EF-hand 69 211 IPR011992 -
Ahy18g2742 328 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Ahy18g2742 328 ProSitePatterns EF-hand calcium-binding domain. 276 288 IPR018247 -
Ahy18g2742 328 Pfam EF hand 101 126 IPR002048 GO:0005509
Ahy18g2742 328 SUPERFAMILY EF-hand 171 302 IPR011992 -
Ahy18g2742 328 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Ahy18g2742 328 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 224 327 IPR039800 GO:0005509|GO:0006851
Ahy18g2742 328 CDD EFh 70 124 IPR002048 GO:0005509
Ahy18g2742 328 Gene3D - 185 305 - -
Ahy18g2742 328 SMART efh_1 267 295 IPR002048 GO:0005509
Ahy18g2742 328 SMART efh_1 99 127 IPR002048 GO:0005509
Ahy18g2742 328 SMART efh_1 69 93 IPR002048 GO:0005509
Ahy18g2742 328 ProSiteProfiles EF-hand calcium-binding domain profile. 263 298 IPR002048 GO:0005509
Ahy18g2742 328 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 224 IPR039800 GO:0005509|GO:0006851
Ahy18g2742 328 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 224 - -
Ahy18g2742 328 CDD EFh_MICU 100 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2742 Ahy-Chr18 130927112 130931717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2742 1 271 EF-hand Containing Proteins AT4G32060 60.133 7.75e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2742 K22827 - gmx:100786375 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2742 18 130927112 130931717 Ahy8g2482 8 47556295 47561777 hybridization
Ahy16g3159 16 147822922 147827174 Ahy18g2742 18 130927112 130931717 PCT
Ahy6g2458 6 109254967 109259068 Ahy18g2742 18 130927112 130931717 PCT
Ahy18g2742 18 130927112 130931717 Ahy16g3159 16 147822922 147827174 PCT
Ahy18g2742 18 130927112 130931717 Ahy6g2458 6 109254967 109259068 PCT