Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2145 ATGATGGCAGCCTCATCCTCCCTCTCCAACTTCTTCTCATTCCTCTTACCCTCAAAACAACCGCCACCATCTCCGTCGCCACCGCCGCCACAAATCGCCATAACCACTCGCCACAAGCCCACTCCCAACTCCGTCTCCCTCGTCGCCCAACAACAGCAACATGACCCCTCGTCTTCTTCTTCTTCTTCCTCCTCGGAGCTCTCTTCAGTGATGTGCCCTTCCCTGGCGCACGCGAACACGCTGTTCTTCCGATCGGCGTACAATGTGCAGGTGGTGGTAGACGACAACGAGCCCGAGGAGAGGCTCCTCAACAGGTTCCGCCGGGAAGTTATGAAGGCCGGCGTCATTCAAGAGTGCAAGCGCCGGAGGTTCTTTGAGAACAAACAGGACCAGAAGAAGCGCAAGTCTCGCGAAGCTGCCAAGCGTAACAAACGTAGCAGGCGCCCACCGATGAGATCTCCAATGCAGAACAGGCAGGATGTCCTCTCAACAACAACTAAGAAGGAGGAAGATGATGATAACTGGGATCTACCTGAAGAAGACGGATTGAGCGCATGA 558 0.552 MMAASSSLSNFFSFLLPSKQPPPSPSPPPPQIAITTRHKPTPNSVSLVAQQQQHDPSSSSSSSSSELSSVMCPSLAHANTLFFRSAYNVQVVVDDNEPEERLLNRFRREVMKAGVIQECKRRRFFENKQDQKKRKSREAAKRNKRSRRPPMRSPMQNRQDVLSTTTKKEEDDDNWDLPEEDGLSA* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2145 185 Pfam Ribosomal protein S21 90 143 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy6g2145 185 MobiDBLite consensus disorder prediction 126 185 - -
Ahy6g2145 185 MobiDBLite consensus disorder prediction 36 67 - -
Ahy6g2145 185 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 2 181 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy6g2145 185 Hamap 30S ribosomal protein S21 [rpsU]. 88 144 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy6g2145 185 MobiDBLite consensus disorder prediction 137 151 - -
Ahy6g2145 185 Gene3D Ribosomal protein S8 103 141 IPR038380 -
Ahy6g2145 185 MobiDBLite consensus disorder prediction 18 35 - -
Ahy6g2145 185 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 2 181 - -
Ahy6g2145 185 PRINTS Ribosomal protein S21 family signature 112 122 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy6g2145 185 PRINTS Ribosomal protein S21 family signature 124 134 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy6g2145 185 PRINTS Ribosomal protein S21 family signature 92 100 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy6g2145 185 PRINTS Ribosomal protein S21 family signature 100 109 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy6g2145 185 TIGRFAM S21p: ribosomal protein bS21 89 145 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy6g2145 185 MobiDBLite consensus disorder prediction 16 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2145 Ahy-Chr6 102888172 102890058 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2145 - - mnt:21400598 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2498 16 134339442 134341347 Ahy6g2145 6 102888172 102890058 hybridization
Ahy6g2145 6 102888172 102890058 Ahy20g2964 20 140415259 140417298 PCT
Ahy6g2145 6 102888172 102890058 Ahy10g2409 10 113652341 113653510 PCT
Ahy20g2964 20 140415259 140417298 Ahy6g2145 6 102888172 102890058 PCT
Ahy10g2409 10 113652341 113653510 Ahy6g2145 6 102888172 102890058 PCT