Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2964 ATGGCTTCTCTATCTACCTTCTCCAACTTCCTCACTTTCTTATTCCCGCCAAAATCACAACCACCACCGCCACCACCACTATCACCACCGCCAAACCTCACCATCCGCAAACCATTACACCACGTGACGCCACTGGATCACTCCGATCAAACTCCACCTTATTCTTGCTCATCGTCTCCGTCGTCGCTGTCGTCGGTGGTGTGCCCGTCGCTGGCGCAGGCGAACACGATGTGGTTCAAATCAACGTACAACGTGGAGGTGGCGGTGGAGGAGAACGAGCCGGAGGAGAGGCTGCTGAACCGGTTCCGAAGAGAAGTGATGAAGGCTGGCGTCATCCAAGAGTGCAGAAGGAGGAGGTACCACGAAGACACACAGGACAAGCGGAAGCGCAAGTCACGTGAGGCTGCTAAGCGTAACCGCAGAAGGCGTCCACAGTTAAAATCATTAGCAGAAAACAAGCAGGCCATCAAAGAAACCGAAAAGAAAGACGATGATGACGATGATAACTGGGATCTACCTGAAGACAATGCATATATTGACCACTTCTAA 549 0.5209 MASLSTFSNFLTFLFPPKSQPPPPPPLSPPPNLTIRKPLHHVTPLDHSDQTPPYSCSSSPSSLSSVVCPSLAQANTMWFKSTYNVEVAVEENEPEERLLNRFRREVMKAGVIQECRRRRYHEDTQDKRKRKSREAAKRNRRRRPQLKSLAENKQAIKETEKKDDDDDDNWDLPEDNAYIDHF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2964 182 TIGRFAM S21p: ribosomal protein bS21 85 142 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy20g2964 182 Hamap 30S ribosomal protein S21 [rpsU]. 84 140 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy20g2964 182 MobiDBLite consensus disorder prediction 16 33 - -
Ahy20g2964 182 MobiDBLite consensus disorder prediction 145 163 - -
Ahy20g2964 182 MobiDBLite consensus disorder prediction 15 62 - -
Ahy20g2964 182 MobiDBLite consensus disorder prediction 120 182 - -
Ahy20g2964 182 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 5 175 - -
Ahy20g2964 182 Gene3D Ribosomal protein S8 99 137 IPR038380 -
Ahy20g2964 182 Pfam Ribosomal protein S21 87 140 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy20g2964 182 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 5 175 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy20g2964 182 MobiDBLite consensus disorder prediction 48 62 - -
Ahy20g2964 182 PRINTS Ribosomal protein S21 family signature 96 105 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy20g2964 182 PRINTS Ribosomal protein S21 family signature 108 118 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy20g2964 182 PRINTS Ribosomal protein S21 family signature 88 96 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy20g2964 182 PRINTS Ribosomal protein S21 family signature 120 130 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2964 Ahy-Chr20 140415259 140417298 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2964 - - aip:107624394 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2964 20 140415259 140417298 Ahy10g2409 10 113652341 113653510 hybridization
Ahy16g2498 16 134339442 134341347 Ahy20g2964 20 140415259 140417298 PCT
Ahy6g2145 6 102888172 102890058 Ahy20g2964 20 140415259 140417298 PCT
Ahy20g2964 20 140415259 140417298 Ahy16g2498 16 134339442 134341347 PCT
Ahy20g2964 20 140415259 140417298 Ahy6g2145 6 102888172 102890058 PCT