Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2498 ATGATGGCAGCCTCATCCTCCCTCTCCAACTTCTTCTCATTCTTCTTACCCTCAAAACAACCGCCACCATCTCCGTCGCCACCGCCACCACAAATCGCCATAACCACTCGCCACAAGCCCACTCCCAACTCCGTCTCCCTCGTCGCCCAAAAACAGCAACATGACCCCTCGTCTTCTTCTTCTTCTTCCTCCTCGGAGCTTTCTTCAGTGATGTGCCCTTCCCTGGCGCACGCGAACACGCTGTTCTTCCGATCGGCGTACAATGTGCAGGTGGTGGTAGACGACAACGAGCCCGAGGAGAGGCTCCTCAACAGGTTCCGCCGGGAAGTTATGAAGGCCGGCGTCATTCAAGAGTGCAAGCGCCGGAGGTTCTTTGAGAACAAACAGGACCAGAAGAAGCGCAAGTCTCGCGAAGCTGCCAAGCGTAACAAACGTAGCAGGCGCCCACCGATGAGATCTCCAATGCAGAACAGGCAGGATGTCCTCTCAACAACAACTAAGAAGGAGGAAGATGATGATAACTGGGATCTACCTGAAGAAGACGGATTGAGCGCATGA 558 0.5448 MMAASSSLSNFFSFFLPSKQPPPSPSPPPPQIAITTRHKPTPNSVSLVAQKQQHDPSSSSSSSSSELSSVMCPSLAHANTLFFRSAYNVQVVVDDNEPEERLLNRFRREVMKAGVIQECKRRRFFENKQDQKKRKSREAAKRNKRSRRPPMRSPMQNRQDVLSTTTKKEEDDDNWDLPEEDGLSA* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2498 185 Pfam Ribosomal protein S21 90 143 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy16g2498 185 TIGRFAM S21p: ribosomal protein bS21 89 145 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy16g2498 185 MobiDBLite consensus disorder prediction 36 67 - -
Ahy16g2498 185 MobiDBLite consensus disorder prediction 126 185 - -
Ahy16g2498 185 Gene3D Ribosomal protein S8 103 141 IPR038380 -
Ahy16g2498 185 Hamap 30S ribosomal protein S21 [rpsU]. 88 144 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy16g2498 185 MobiDBLite consensus disorder prediction 137 151 - -
Ahy16g2498 185 MobiDBLite consensus disorder prediction 18 35 - -
Ahy16g2498 185 MobiDBLite consensus disorder prediction 18 67 - -
Ahy16g2498 185 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 2 181 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy16g2498 185 PRINTS Ribosomal protein S21 family signature 112 122 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy16g2498 185 PRINTS Ribosomal protein S21 family signature 124 134 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy16g2498 185 PRINTS Ribosomal protein S21 family signature 92 100 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy16g2498 185 PRINTS Ribosomal protein S21 family signature 100 109 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy16g2498 185 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 2 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2498 Ahy-Chr16 134339442 134341347 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2498 - - mnt:21400598 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2498 16 134339442 134341347 Ahy6g2145 6 102888172 102890058 hybridization
Ahy16g2498 16 134339442 134341347 Ahy20g2964 20 140415259 140417298 PCT
Ahy16g2498 16 134339442 134341347 Ahy10g2409 10 113652341 113653510 PCT
Ahy20g2964 20 140415259 140417298 Ahy16g2498 16 134339442 134341347 PCT
Ahy10g2409 10 113652341 113653510 Ahy16g2498 16 134339442 134341347 PCT