Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2409 ATGGCTTCCCTATCCACCTTCTCCAACTTCCTCACTTTCTTATTCCCGCCAAAATCACAACCACCACCACCACCACCATTACCACCACTACCACCACCGCCAAACCTCACCATCCGCAAACCCTTACACCACGTGACGCCACTGGATCACTCCGATCAAGATCCACCTTATTCTTGCTCATCGTCTCCGTCGTCGCTGTCGTCGGTGGTGTGCCCGTCGCTGGCGCAGGCGAACACGATGTGGTTCAAATCAACGTACAACGTGGAGGTGGCGGTGGAGGAGAACGAGCCGGAGGAGAGGCTGCTGAACCGGTTCCGAAGAGAAGTGATGAAGGCTGGCGTCATCCAAGAGTGCAGGAGGAGGAGGTACCACGAAGACACACAGGACAAGCGGAAGCGCAAGTCACGTGAGGCTGCTAAGCGTAACCGCAGAAGGCGTCCACAGTTAAAATCATTAGCAGAAAACAAGCAGGCTATCAAAGAAACCAAAAAGAAAGACGATGATGACGATGATAACTGGGATCTACCTGAAGACAATGCATATATTGACCACTTCTAA 558 0.5233 MASLSTFSNFLTFLFPPKSQPPPPPPLPPLPPPPNLTIRKPLHHVTPLDHSDQDPPYSCSSSPSSLSSVVCPSLAQANTMWFKSTYNVEVAVEENEPEERLLNRFRREVMKAGVIQECRRRRYHEDTQDKRKRKSREAAKRNRRRRPQLKSLAENKQAIKETKKKDDDDDDNWDLPEDNAYIDHF* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2409 185 MobiDBLite consensus disorder prediction 123 185 - -
Ahy10g2409 185 Hamap 30S ribosomal protein S21 [rpsU]. 87 143 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy10g2409 185 PRINTS Ribosomal protein S21 family signature 91 99 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy10g2409 185 PRINTS Ribosomal protein S21 family signature 123 133 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy10g2409 185 PRINTS Ribosomal protein S21 family signature 111 121 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy10g2409 185 PRINTS Ribosomal protein S21 family signature 99 108 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy10g2409 185 MobiDBLite consensus disorder prediction 148 170 - -
Ahy10g2409 185 TIGRFAM S21p: ribosomal protein bS21 88 145 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy10g2409 185 MobiDBLite consensus disorder prediction 15 66 - -
Ahy10g2409 185 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 5 178 - -
Ahy10g2409 185 MobiDBLite consensus disorder prediction 16 38 - -
Ahy10g2409 185 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 5 178 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ahy10g2409 185 Gene3D Ribosomal protein S8 102 140 IPR038380 -
Ahy10g2409 185 Pfam Ribosomal protein S21 90 143 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2409 Ahy-Chr10 113652341 113653510 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2409 - - aip:107624394 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2964 20 140415259 140417298 Ahy10g2409 10 113652341 113653510 hybridization
Ahy16g2498 16 134339442 134341347 Ahy10g2409 10 113652341 113653510 PCT
Ahy6g2145 6 102888172 102890058 Ahy10g2409 10 113652341 113653510 PCT
Ahy10g2409 10 113652341 113653510 Ahy16g2498 16 134339442 134341347 PCT
Ahy10g2409 10 113652341 113653510 Ahy6g2145 6 102888172 102890058 PCT