Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1359 ATGTTCCCACTCGCCACTCCCACTGTGGTCTCACCCACACGGGCACCCATGGCCTCTCTCCGGCACCTGTCCCTCAATCCCCACCGTTCATCATCACTCTCTCCATTCTCCCTCTCCTTCCCTCCTTCTTCTTCAACCACCTTTAAGTCCTCATCCATTCGCGCCTCCTCCCAAAACCACCCCAAACCCCAAAACGACGATCTCCTCTCCCGTTTTCTCAAAACCCTAATAAACCCCATCCTCTCGCCAGCCTTCGAAACCACCTGCATCGTCATCTTCGCCACCGCATTCTTCTTCATGCGCCTCCGCCATAACCCCGTCATCGCCGCCCCCCTCACCTCACCCTCCGCCACCGCCGAGTCCTACACCTCCGCCGACCCCGACGCCCCCAACGAGGAGAAAGAAAAGGAAATCGAGGAGCACCTCAGCACAAACCCCTCCGACATCGAAGCCCTCCGCACTCTCATGGAGCTCAAGATCAGAGCGCGCAAAATCGACGAGGCCATTGGCATCATTGACAGGCTCATCGAGCTGGAGCCTCAAGAGTCCGAGTGGCCACTCCTCAAGGCTCACATGCACGTCTACAACGATCAAGTTGACCTTGCACGCGACGTGTTCGAGGAAATTCTCCAGAGAGACCCGCTTCGCGTTGAAGCCTACCACGGCCTCGCAATGACCGCCTTTGAGTCCAAGCTTCCGTTGAATGATTTGTTCAGGAGGATTGAGGTTGCCATGGAGCAGTGCAAGAAGCAGAACAGGAATTCAGAGGTCAGGGACTTCAGGCTCTTGATCGCGCAGATAAAGGTCATGGAGGGAGACCTTGATGCGGCTCTCAAGGCTTACCAGGATCTTGTGAAGGAGGAACCAAGGGATTTCAGGCCTTATCTTTGTCAGGGTATTATATACACCTTGCTGAAGAAGAAAGACGAAGCTGAGAAGCAGTTCAACAAGTTCCGAAGGCTCGTCCCCAAGAACCATCCTTACAAGGAATATTTCGAGGACAATATGTCTGCCACCAAGTTTTTCTCGCAGAAGGTTGAGAGGGAAGGAGCTGCTGCTAGGAGCTGA 1068 0.5449 MFPLATPTVVSPTRAPMASLRHLSLNPHRSSSLSPFSLSFPPSSSTTFKSSSIRASSQNHPKPQNDDLLSRFLKTLINPILSPAFETTCIVIFATAFFFMRLRHNPVIAAPLTSPSATAESYTSADPDAPNEEKEKEIEEHLSTNPSDIEALRTLMELKIRARKIDEAIGIIDRLIELEPQESEWPLLKAHMHVYNDQVDLARDVFEEILQRDPLRVEAYHGLAMTAFESKLPLNDLFRRIEVAMEQCKKQNRNSEVRDFRLLIAQIKVMEGDLDAALKAYQDLVKEEPRDFRPYLCQGIIYTLLKKKDEAEKQFNKFRRLVPKNHPYKEYFEDNMSATKFFSQKVEREGAAARS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1359 355 SUPERFAMILY TPR-like 146 326 IPR011990 GO:0005515
Ahy6g1359 355 Coils Coil 234 254 - -
Ahy6g1359 355 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 21 348 - -
Ahy6g1359 355 SMART tpr_5 149 182 IPR019734 GO:0005515
Ahy6g1359 355 SMART tpr_5 292 325 IPR019734 GO:0005515
Ahy6g1359 355 SMART tpr_5 258 291 IPR019734 GO:0005515
Ahy6g1359 355 Gene3D Tetratricopeptide repeat domain 103 338 IPR011990 GO:0005515
Ahy6g1359 355 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 21 348 - -
Ahy6g1359 355 MobiDBLite consensus disorder prediction 127 143 - -
Ahy6g1359 355 MobiDBLite consensus disorder prediction 114 143 - -
Ahy6g1359 355 Pfam Tetratricopeptide repeat 267 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1359 Ahy-Chr6 21460788 21462220 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1359 - - adu:107493319 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1497 16 33039721 33041155 Ahy6g1359 6 21460788 21462220 hybridization
Ahy6g1359 6 21460788 21462220 Ahy12g1175 12 32154378 32157460 PCT
Ahy6g1359 6 21460788 21462220 Ahy2g1066 2 30163175 30166827 PCT
Ahy12g1175 12 32154378 32157460 Ahy6g1359 6 21460788 21462220 PCT
Ahy2g1066 2 30163175 30166827 Ahy6g1359 6 21460788 21462220 PCT