Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1175 ATGTTCTCATCGGTGAGAATCTCTCGGGTTGAGATATTTAGTTATTTACCGGTTTGGCAGTTCTCAATTCCCAGTTCAGCCTCATCCATGGAGTCTCTCTCTTCCCTGAAACCCTCTCATCACCACCACCAATCCCTTCTCTCTCTTAATCACCACCATTCAACAACACCATTCTCTTCCGTTCCTTTCCTTTCTCTACCATCTTCCTCCTCTTCCTCTTCCGCTTCCTTTCGATTTTCACCCATCAAAGCCTCACACTCACCCAAAAACCCATTAACCCACGTGACCCAAACACTAAACCCCTTCTTCTCACTCATCCTCAAATCAGCATGCATCGCAGCTGCATTGTTCCTCATGCGCCTTCACTTCAATTCTCCCGCCCTCGCCGCTGCCGCTACAGCCGCACCGCAACCACCATCTTCCGCGACGGAATCCTCTCCGGAAGATGCCTCCGGCGAAGAAAAAATCTCCCCCGAAAAAAAGGTTTCGGGTGAAGAGAACAGCACCGTTGAAGATCTTCAGTCCCTCATCGAAGCAAAGATCAGAGAGCGTAAATTCGACGAAGCGGTTCCGATGGTAGACCGCTTGATTGAAATTGAGCCGGAGGAGCTTGATTGGCCGCTGCTGAAGGCGCACCTGCGTGCCCGCAACAACGACCACGCGGTGGCGCGGAACTTGTTTGAAGAAGTGCTGAAGAGAGACCCTTATAACGTGATTGCGCTTCATGGTCTTCTTGTGGCGGCTTTTGAGTTGAAGGAACCAACGAAGGATTTTATGCCAAGGTTTGAAGAAGCTGTGAAGTTCCTGGAGAAAGAAGAGAGGGATTCTGAGGCAAGGGACTTGAAGCTGCTAATTGCGCAGGTTAAGGTTTTGGAAGGGGAATTATCCAGTGCGCTGAAGGTGTATGAGGATCTTGTGACAAAAGAACCGAAGGATTTTAGGCCTTACTTGTGTAAGGGTGTGGTGTATACTATGATGAAGAAGAAAGATGAAGCTGAAAGACAGTTTGAGAAGTTTAGGGAACTTGTCCCAGAGGATCATCATCACAAAGATTATTTTGAGGACAATGCTAATGTGTTCTTGCAGAAGCTAGAGCAAAAGAAAGAAGCGGCTCTGAAGAGGTGA 1125 0.4827 MFSSVRISRVEIFSYLPVWQFSIPSSASSMESLSSLKPSHHHHQSLLSLNHHHSTTPFSSVPFLSLPSSSSSSSASFRFSPIKASHSPKNPLTHVTQTLNPFFSLILKSACIAAALFLMRLHFNSPALAAAATAAPQPPSSATESSPEDASGEEKISPEKKVSGEENSTVEDLQSLIEAKIRERKFDEAVPMVDRLIEIEPEELDWPLLKAHLRARNNDHAVARNLFEEVLKRDPYNVIALHGLLVAAFELKEPTKDFMPRFEEAVKFLEKEERDSEARDLKLLIAQVKVLEGELSSALKVYEDLVTKEPKDFRPYLCKGVVYTMMKKKDEAERQFEKFRELVPEDHHHKDYFEDNANVFLQKLEQKKEAALKR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1175 374 Gene3D Tetratricopeptide repeat domain 104 373 IPR011990 GO:0005515
Ahy12g1175 374 SUPERFAMILY TPR-like 181 346 IPR011990 GO:0005515
Ahy12g1175 374 Coils Coil 361 374 - -
Ahy12g1175 374 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 40 366 - -
Ahy12g1175 374 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 40 366 - -
Ahy12g1175 374 MobiDBLite consensus disorder prediction 134 169 - -
Ahy12g1175 374 MobiDBLite consensus disorder prediction 148 167 - -
Ahy12g1175 374 ProSiteProfiles TPR repeat profile. 313 346 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1175 Ahy-Chr12 32154378 32157460 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1175 - - ahf:112727277 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1175 12 32154378 32157460 Ahy2g1066 2 30163175 30166827 hybridization
Ahy16g1497 16 33039721 33041155 Ahy12g1175 12 32154378 32157460 PCT
Ahy6g1359 6 21460788 21462220 Ahy12g1175 12 32154378 32157460 PCT
Ahy12g1175 12 32154378 32157460 Ahy16g1497 16 33039721 33041155 PCT
Ahy12g1175 12 32154378 32157460 Ahy6g1359 6 21460788 21462220 PCT