Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1497 ATGTTCCCACTCGCCACTCCCACTGTGGTCTCACCCACACGGGCACCCATGGCCTCTCTCCGGCACCTGTCCCTCAATCCCCACCGTTCATCGTCACTCTCTCCATTCTCCCTCTCCTTCCCTCCTTCTTCTTCAACCACCTTTAAGTTCTCATCCATTCGCGCCTCCTCCCAAAACCACCCCAAACCCCAAAACGACGATCTCCTCTCCCGTTTCCTCAAAACCCTAATAAACCCCATCCTCTCGCCAGCCTTCGAAACCACCTGCATCGTTATCTTCGCCACCGCATTCTTTTTCATGCGCCTCCGCCATAACCCCGTCATCGCCGCCCCCCTCACCTCACCCTCCGCCACCGCCGAGACCTACACCTCCGCCGACCCCGACGCCCCCAACGAGGAGAAAGAAAAGGAAATCGAGGAGCACCTCAGCACAAACGCCTCCGACATCGAAGCCCTCCGCACTCTCATGGAGCTCAAGATCAGAGCGCGCAAAATCGACGAGGCCATTGGCATCATTGACAGGCTCATCGAGCTGGAGCCTCAAGAGTCCGAGTGGCCACTCCTCAAGGCTCACATGCACGTCTACAACGATCAAGTTGACCTTGCACGCAACGTGTTCGAGGAAATTCTCCAGAGAGACCCGCTTCGCGTTGAAGCCTACCACGGCCTCGCAATGACCGCCTTTGAGTCCAAGCTTCCGTTGAATGATTTGTTGAAGAGGATTGAGGCTGCCATGGAGCAGTGCAAGAAGCAGAACAGGAATTCAGAGGTCAGGGACTTCAAGCTCTTGATCGCGCAGATAAAGGTCATGGAGGGAGACCTTGATGCGGCTCTCAAGGCTTACCAGGATCTTGTGAAGGAGGAACCAAGGGATTTCAGGCCTTATCTTTGTCAGGGTATTATATACACCTTGCTGAAGAAGAAAGACGAAGCTGAGAAGCAGTTCAACAAGTTTCGAAGGCTCGTCCCCAAGAACCATCCTTACAAGGAATATTTCGAGGACAACATGTCTGCCACCAAGTTTTTCTCGCAGAAGGTTGAGAGGGAAGGAGCTGCTGCTCGGAGCTGA 1068 0.5431 MFPLATPTVVSPTRAPMASLRHLSLNPHRSSSLSPFSLSFPPSSSTTFKFSSIRASSQNHPKPQNDDLLSRFLKTLINPILSPAFETTCIVIFATAFFFMRLRHNPVIAAPLTSPSATAETYTSADPDAPNEEKEKEIEEHLSTNASDIEALRTLMELKIRARKIDEAIGIIDRLIELEPQESEWPLLKAHMHVYNDQVDLARNVFEEILQRDPLRVEAYHGLAMTAFESKLPLNDLLKRIEAAMEQCKKQNRNSEVRDFKLLIAQIKVMEGDLDAALKAYQDLVKEEPRDFRPYLCQGIIYTLLKKKDEAEKQFNKFRRLVPKNHPYKEYFEDNMSATKFFSQKVEREGAAARS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1497 355 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 21 348 - -
Ahy16g1497 355 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 21 348 - -
Ahy16g1497 355 Coils Coil 234 258 - -
Ahy16g1497 355 Pfam Tetratricopeptide repeat 188 231 - -
Ahy16g1497 355 Pfam Tetratricopeptide repeat 267 324 - -
Ahy16g1497 355 Gene3D Tetratricopeptide repeat domain 255 340 IPR011990 GO:0005515
Ahy16g1497 355 SMART tpr_5 149 182 IPR019734 GO:0005515
Ahy16g1497 355 SMART tpr_5 258 291 IPR019734 GO:0005515
Ahy16g1497 355 SMART tpr_5 292 325 IPR019734 GO:0005515
Ahy16g1497 355 SUPERFAMILY TPR-like 161 317 IPR011990 GO:0005515
Ahy16g1497 355 Gene3D Tetratricopeptide repeat domain 116 254 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1497 Ahy-Chr16 33039721 33041155 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1497 - - adu:107493319 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1497 16 33039721 33041155 Ahy6g1359 6 21460788 21462220 hybridization
Ahy16g1497 16 33039721 33041155 Ahy12g1175 12 32154378 32157460 PCT
Ahy16g1497 16 33039721 33041155 Ahy2g1066 2 30163175 30166827 PCT
Ahy12g1175 12 32154378 32157460 Ahy16g1497 16 33039721 33041155 PCT
Ahy2g1066 2 30163175 30166827 Ahy16g1497 16 33039721 33041155 PCT