Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1191 ATGTCTGGGGAAGAATTTGATGGGCATGATGATATGGGAGGGTATGTGCCTGAGGACCCTGGTTTTCAACAAGATCATTCTGTTGAACTTGATGAGGGGAATGTGTTTGATAGCTCTGGTTTTCCTCAGCTGCATCAACTTGATGAACACCATGATCCAGGAAATTTTGCTGAGGATGCCAATCCTCCTGTGAATGATTTTGCTGGCTATGATGTTGGAGATTTTCCGGAAGACCCCAGTTCTCCACAAGAGGAGCATGTCATTGAAGAAAATCATGATGTAGGAGATGTAACTGAGAATTTTGGTTCTGTGCCACAAGAAGGGCATGAGAATGATTCCCAAGGACATGAAATTAAGAAGTGGCCTGGGTGGCCTGGAGAGAATGTCTTCAGGATGTTGGTCCCGGTGCAAAAGGTTGGCAGTATTATTGGCCGGAAGGGTGAGTTTATTAAGAAAATCACAGAAGAAACTAAGGCGCGAATCAAAATTCTTGATGGTCCTCCTGGAACCATGGAAAGAGCTGTAATGGTTTCGGCAAAAGAAGAGCCAGATCGGACCATACCACCTGCAGTTGAGGGTTTGTTAAGGGTTCATAAACAAGTCATCAATCTTGACCATGACTCGGCAGACACATCAGGTGCTGGGCCCTCAATTATCACTAGGCTTCTAGTTGCAGATACTCAAGCAGGAAGTCTGATTGGGAAGCAGGGTTCCACCATAAAATCCATTCAAGATGGCTCTGGTTGCATTATACGTGTTCTTGGATCAGAAAACCTACCTGTGTTTGCTTTGAGAGACGATAGTGTTGTTGAAGTACAAGGTGAACCTGCTGGAGTTCATAAGGCAGTTGAACTTATTGCAGTTCATTTGCGTAAGTTCTTGGTTGACCGCAGCATAGTCGGAGTATTTGAAACAAAGATGCAAATGCCAGATGTTCGAGTCAACCACAATGCACCCCCACGCCAACCTTGGGTTCCTCCTCCTCAAGGGTTTCCAGCTCCTGGTGGCGGTGGGCCTGCTTTTGCACCACCTAGTCAGCAATATATGCCACCATCACATCCCTATGATAATTATTACCCAACAGCCGACATGCCTCCTATGGACAAACAATTCCATCAGGCTCCACTATCTGCTTATGGCAGGGATCCTTCCGCTGGAATTCATCCACCAAGTGCACAACCACAACAGTCTGCTGCAACTAAGGTTACACAGCACATGCAAATTCCTCTATCATATGCAGATGCTGTTATTGGAGCATCAGGTGCAAATATCAGTTACATTCGTCGTGCTAGTGGAGCAAGTGTTACGGTTCAGGAGACAAGGGGAGTGCCAGGGGAGATGACTGTTGAAATAAGTGGGACTACATCAGAGATACAGGCAGCCCAACAGCTGGTTCAGAACTTTGTCGCTGAAGCTGCAAGTGCTGCCCAGGATCAAGTGGCGGGAGCAATTAGCCAAGGTTACAGTTCCTATCCAACTAATGCTCCAGCATATGCTTCTCCGCCCTCTAGCACTGCTGGCCATGTGCCTTCTTCCGAGTATGGCCCCATGTATGGTACCAATTATGGTTATTAA 1575 0.4667 MSGEEFDGHDDMGGYVPEDPGFQQDHSVELDEGNVFDSSGFPQLHQLDEHHDPGNFAEDANPPVNDFAGYDVGDFPEDPSSPQEEHVIEENHDVGDVTENFGSVPQEGHENDSQGHEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTMERAVMVSAKEEPDRTIPPAVEGLLRVHKQVINLDHDSADTSGAGPSIITRLLVADTQAGSLIGKQGSTIKSIQDGSGCIIRVLGSENLPVFALRDDSVVEVQGEPAGVHKAVELIAVHLRKFLVDRSIVGVFETKMQMPDVRVNHNAPPRQPWVPPPQGFPAPGGGGPAFAPPSQQYMPPSHPYDNYYPTADMPPMDKQFHQAPLSAYGRDPSAGIHPPSAQPQQSAATKVTQHMQIPLSYADAVIGASGANISYIRRASGASVTVQETRGVPGEMTVEISGTTSEIQAAQQLVQNFVAEAASAAQDQVAGAISQGYSSYPTNAPAYASPPSSTAGHVPSSEYGPMYGTNYGY* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1191 524 Pfam KH domain 130 182 IPR004088 GO:0003723
Ahy6g1191 524 Pfam KH domain 403 466 IPR004088 GO:0003723
Ahy6g1191 524 Pfam KH domain 220 286 IPR004088 GO:0003723
Ahy6g1191 524 ProSiteProfiles Type-1 KH domain profile. 127 194 - -
Ahy6g1191 524 MobiDBLite consensus disorder prediction 320 350 - -
Ahy6g1191 524 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 392 472 IPR036612 GO:0003723
Ahy6g1191 524 MobiDBLite consensus disorder prediction 318 352 - -
Ahy6g1191 524 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 57 501 - -
Ahy6g1191 524 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 122 181 IPR036612 GO:0003723
Ahy6g1191 524 CDD KH-I 403 466 - -
Ahy6g1191 524 ProSiteProfiles Type-1 KH domain profile. 401 465 - -
Ahy6g1191 524 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 213 300 IPR036612 GO:0003723
Ahy6g1191 524 MobiDBLite consensus disorder prediction 1 120 - -
Ahy6g1191 524 Gene3D K Homology domain, type 1 390 477 IPR036612 GO:0003723
Ahy6g1191 524 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 57 501 - -
Ahy6g1191 524 CDD PCBP_like_KH 129 198 - -
Ahy6g1191 524 CDD PCBP_like_KH 221 287 - -
Ahy6g1191 524 SMART kh_6 126 199 IPR004087 GO:0003676
Ahy6g1191 524 SMART kh_6 400 470 IPR004087 GO:0003676
Ahy6g1191 524 SMART kh_6 216 291 IPR004087 GO:0003676
Ahy6g1191 524 Gene3D - 127 295 - -
Ahy6g1191 524 MobiDBLite consensus disorder prediction 379 400 - -
Ahy6g1191 524 MobiDBLite consensus disorder prediction 79 96 - -
Ahy6g1191 524 ProSiteProfiles Type-1 KH domain profile. 217 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1191 Ahy-Chr6 17483381 17488028 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1191 K21444 - gmx:100799901 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0139 16 1449804 1454401 Ahy6g1191 6 17483381 17488028 hybridization
Ahy6g1191 6 17483381 17488028 Ahy12g0823 12 15076169 15081622 PCT
Ahy6g1191 6 17483381 17488028 Ahy2g0700 2 11610627 11616363 PCT
Ahy12g0823 12 15076169 15081622 Ahy6g1191 6 17483381 17488028 PCT
Ahy2g0700 2 11610627 11616363 Ahy6g1191 6 17483381 17488028 PCT