Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0823 ATGTCTGGGGAAGAATATGATGCACAAGATGCAGGCTATGTGCCTGAAAACCCTGAATTTCCGCAAAACCATTCCGATGAACATGATGAAGGAAATGTGATTGATGATGCGGGGTTTCCTCAACTGCAGCCTGATGAACATGACGATGCCAATTTGGATGAGGGAGCTAATCCTCCTGAAAATCAGTTTGATGGCCACGAAATTGAAGGTTTGCCCGAAGATACCGATGCTCCTCCACAAGAGAATGCTGAGGAGGAGGAGGAACATCATGATATTGGGGATGTTACTGGGAATTTCAATTCTCAGGAGAAACAGGGAGCACAGGATAATTCGAAAGGAAATGAAATAAAGAAGTGGCCTGGTTGGCCTGGAGAGAATGTTTTCCGGATGTTGATTCCTGTACAAAAGGTTGGCAGTATCATCGGCCGCAAGGGAGAGTTTATTAAGAAAATGACGGAAGAGACCAAAGCTCGCATTAAAATTCTTGATGGTCCGCCAGGAACCATGGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGCGCCATACCGCCTGCTGTGGAGGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTGGACCACAATCCTCCAGATGCATCGGCCGCATCAAACCAAGTTGTTACGAGGCTTCTGGTGGCAGATACTCAAGCAGGAAGCTTGATCGGGAAGCAGGGTTCCACAGTAAAGTCCTTTCAAGATAACACTGGTTGCAATATACGTGTTCTTGGATCAGCTGAATACCTGCCTGTATTTGCTCTACGGGATGATAGTGTTGTTGAAATACAAGGGGAGTCTGCTGGGGTTCACAAGGCAGTTGAACTTATTGCACTTCATCTCCGTAAATTCCTGGTTGACCGCGGCATAGTTGGAGTGTTTGAAACACAGATGCAAAGGCCAGATGCTCGAGTTAACCAGAATGTGCCCCCACCTCAAGCTTGGGGTCCTCCACATCCACAAGGGTTCCCCACTCCTGGCAGCGGCGGACCTGCTTTTGCACCCAATCCTCAATATATGCCTCCTTCACATAACTACGATAATTACTACCCACCTCCTGATCTGCCTCCCGTAGATAAGCTCATTCCTCCACCTGCCTATGCAAGGGATACTTCTCAATCACAGCAGTCTGTTGCAAATAAGGTCACACAGCACATGCAAATTCCTCTAACCTATGCAGATGCAGTTATTGGAGCATCAGGATCAAATATCAGCTACATTCGCCGTGCTAGTGGCGCAAGTATTACAATTCAGGAGACCAGGGGTATTCCAGGGGAAATGACTGTTGAGATAAGTGGCACCGCGTCACAAATACAGGCAGCTCAACAACTGGTGCAGAATTTCATGGCTGAAGCGGCGAGTGCGGCACAAGATCATATGGGGGGGTCAATTAACCAAGGTTACAATTCCTATCCTACCAATGCTTCTGTTTATGCATCTCCACCTTCAAGTGCTGGAGCACATACAGGTCATGCACCTGCTGCTGATTATGGTTCGGTTATGGAACCAATTATGGTTACTAAGAGTTAA 1554 0.4691 MSGEEYDAQDAGYVPENPEFPQNHSDEHDEGNVIDDAGFPQLQPDEHDDANLDEGANPPENQFDGHEIEGLPEDTDAPPQENAEEEEEHHDIGDVTGNFNSQEKQGAQDNSKGNEIKKWPGWPGENVFRMLIPVQKVGSIIGRKGEFIKKMTEETKARIKILDGPPGTMERAVMVSAKEEPDRAIPPAVEGLLRVHKQVVNVDHNPPDASAASNQVVTRLLVADTQAGSLIGKQGSTVKSFQDNTGCNIRVLGSAEYLPVFALRDDSVVEIQGESAGVHKAVELIALHLRKFLVDRGIVGVFETQMQRPDARVNQNVPPPQAWGPPHPQGFPTPGSGGPAFAPNPQYMPPSHNYDNYYPPPDLPPVDKLIPPPAYARDTSQSQQSVANKVTQHMQIPLTYADAVIGASGSNISYIRRASGASITIQETRGIPGEMTVEISGTASQIQAAQQLVQNFMAEAASAAQDHMGGSINQGYNSYPTNASVYASPPSSAGAHTGHAPAADYGSVMEPIMVTKS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0823 517 CDD PCBP_like_KH 127 196 - -
Ahy12g0823 517 Gene3D - 125 293 - -
Ahy12g0823 517 ProSiteProfiles Type-1 KH domain profile. 125 192 - -
Ahy12g0823 517 Pfam KH domain 218 286 IPR004088 GO:0003723
Ahy12g0823 517 Pfam KH domain 128 180 IPR004088 GO:0003723
Ahy12g0823 517 Pfam KH domain 391 454 IPR004088 GO:0003723
Ahy12g0823 517 Coils Coil 446 466 - -
Ahy12g0823 517 ProSiteProfiles Type-1 KH domain profile. 215 285 - -
Ahy12g0823 517 MobiDBLite consensus disorder prediction 319 333 - -
Ahy12g0823 517 CDD KH-I 391 454 - -
Ahy12g0823 517 Gene3D K Homology domain, type 1 377 465 IPR036612 GO:0003723
Ahy12g0823 517 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 205 296 IPR036612 GO:0003723
Ahy12g0823 517 ProSiteProfiles Type-1 KH domain profile. 389 453 - -
Ahy12g0823 517 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 49 510 - -
Ahy12g0823 517 MobiDBLite consensus disorder prediction 1 120 - -
Ahy12g0823 517 MobiDBLite consensus disorder prediction 95 109 - -
Ahy12g0823 517 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 117 180 IPR036612 GO:0003723
Ahy12g0823 517 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 49 510 - -
Ahy12g0823 517 MobiDBLite consensus disorder prediction 354 371 - -
Ahy12g0823 517 SMART kh_6 388 458 IPR004087 GO:0003676
Ahy12g0823 517 SMART kh_6 214 290 IPR004087 GO:0003676
Ahy12g0823 517 SMART kh_6 124 197 IPR004087 GO:0003676
Ahy12g0823 517 MobiDBLite consensus disorder prediction 310 389 - -
Ahy12g0823 517 CDD PCBP_like_KH 217 286 - -
Ahy12g0823 517 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 381 460 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0823 Ahy-Chr12 15076169 15081622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0823 K21444 - gmx:100818363 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0823 12 15076169 15081622 Ahy12g0823 12 15076169 15081622 ECH
Ahy12g0823 12 15076169 15081622 Ahy2g0700 2 11610627 11616363 hybridization
Ahy16g0139 16 1449804 1454401 Ahy12g0823 12 15076169 15081622 PCT
Ahy6g1191 6 17483381 17488028 Ahy12g0823 12 15076169 15081622 PCT
Ahy12g0823 12 15076169 15081622 Ahy16g0139 16 1449804 1454401 PCT
Ahy12g0823 12 15076169 15081622 Ahy6g1191 6 17483381 17488028 PCT