Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0139 ATGTCTGGGGAAGAATTTGATGGGCATGATGATATGGGAGGGTATGTGCCTGAGGACCCTGGTTTTCAACAAGATCATTCTGTTGAACTTGATGAGGGGAATGTGTTTGATAGCTCTGGTTTTCCTCAGCTGCATCAACTTGATGAACACCATGATCCAGGAAATTTTGCTGAGGATGCCAATCCTCCTGTGAATGATTTTGCTGGCTATGATGTTGGAGATTTTCCGGAAGACCCCAGTTCTCCACAAGAGGAGCATGTCATTGAAGAAAATCATGATGTAGGAGATGTAACTGAGAATTTTGGTCCTTCTGTGCCACAAGAAGGGCATGAGAATGATTCCCAAGGACATGAAATTAAGAAGTGGCCTGGGTGGCCTGGAGAGAATGTCTTCAGGATGTTGGTCCCGGTGCAAAAGGTTGGCAGTATTATTGGCCGGAAGGGTGAGTTTATTAAGAAAATCACAGAAGAAACTAAGGCGCGAATCAAAATTCTTGATGGTCCTCCTGGAACCATGGAAAGAGCTGTAATGGTTTCGGCAAAAGAAGAGCCAGATCGGACCATACCACCTGCAGTTGAGGGTTTGTTAAGGGTTCATAAACAAGTCATCAATCTTGACCATGACTCGGCAGACACATCAGGTGCTGGGCCCTCAATTATCACTAGGCTTCTAGTCGCAGATACTCAAGCAGGAAGTCTGATTGGGAAGCAGGGTTCCACCATAAAATCCATTCAAGATGGCTCTGGTTGCATTATACGTGTTCTTGGATCAGAAAACCTACCTGTGTTTGCTTTGAGAGACGATAGTGTTGTTGAAGTACAAGGTGAACCTGCTGGAGTTCATAAGGCAGTTGAACTTATTGCAGTTCATTTGCGTAAGTTCTTGGTTGACCGCAGCATAGTCGGAGTATTTGAAACAAAGATGCAAATGCCAGATGTTCGAGTCAACCACAATGCACCCCCACGCCAACCTTGGGTTCCTCCTCCTCAAGGGTTTCCAGCTCCTGGTGGTGGTGGGCCTGCTTTTGCACCCCCTAGTCAGCAATATATGCCACCATCACATCCCTATGATAATTATTACCCAACAGCCGACATGCCTCCTATGGACAAACAATTCCATCAGGCTCCACTATCTGCTTATGGCAGGGATCCATCCGCTGGAATTCATCCACCAAGTGCACAACCACAACAGTCTGCTGCAACTAAGGTTACACAGCACATGCAAATTCCTCTATCATATGCAGATGCTGTTATTGGAGCATCAGGTGCAAATATCAGTTACATTCGTCGTGCTAGTGGAGCAAGTGTTACGGTTCAGGAGACAAGGGGAGTGCCAGGGGAGATGACTGTTGAAATAAGTGGGACTACATCAGAGATACAGGCAGCCCAACAGCTGGTTCAGAACTTCGTCGCTGAAGCTGCAAGTGCTGCCCAGGATCAAGTGGCAGGAGCAATTAGCCAAGGTTACGGTTCCTATCCAACTAATGCTCCAGCATATGCTTCTCCGCCCTCTAGCACTGCTGGCCATGTGCCTTCTTCCGAGTATGGCCCCATGTATGGTACCAATTATGGTTATTAA 1578 0.4683 MSGEEFDGHDDMGGYVPEDPGFQQDHSVELDEGNVFDSSGFPQLHQLDEHHDPGNFAEDANPPVNDFAGYDVGDFPEDPSSPQEEHVIEENHDVGDVTENFGPSVPQEGHENDSQGHEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTMERAVMVSAKEEPDRTIPPAVEGLLRVHKQVINLDHDSADTSGAGPSIITRLLVADTQAGSLIGKQGSTIKSIQDGSGCIIRVLGSENLPVFALRDDSVVEVQGEPAGVHKAVELIAVHLRKFLVDRSIVGVFETKMQMPDVRVNHNAPPRQPWVPPPQGFPAPGGGGPAFAPPSQQYMPPSHPYDNYYPTADMPPMDKQFHQAPLSAYGRDPSAGIHPPSAQPQQSAATKVTQHMQIPLSYADAVIGASGANISYIRRASGASVTVQETRGVPGEMTVEISGTTSEIQAAQQLVQNFVAEAASAAQDQVAGAISQGYGSYPTNAPAYASPPSSTAGHVPSSEYGPMYGTNYGY* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0139 525 Pfam KH domain 221 287 IPR004088 GO:0003723
Ahy16g0139 525 Pfam KH domain 131 183 IPR004088 GO:0003723
Ahy16g0139 525 Pfam KH domain 404 467 IPR004088 GO:0003723
Ahy16g0139 525 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 57 502 - -
Ahy16g0139 525 ProSiteProfiles Type-1 KH domain profile. 128 195 - -
Ahy16g0139 525 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 123 182 IPR036612 GO:0003723
Ahy16g0139 525 CDD PCBP_like_KH 222 288 - -
Ahy16g0139 525 MobiDBLite consensus disorder prediction 321 351 - -
Ahy16g0139 525 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 214 301 IPR036612 GO:0003723
Ahy16g0139 525 SMART kh_6 127 200 IPR004087 GO:0003676
Ahy16g0139 525 SMART kh_6 401 471 IPR004087 GO:0003676
Ahy16g0139 525 SMART kh_6 217 292 IPR004087 GO:0003676
Ahy16g0139 525 MobiDBLite consensus disorder prediction 319 353 - -
Ahy16g0139 525 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 393 473 IPR036612 GO:0003723
Ahy16g0139 525 MobiDBLite consensus disorder prediction 380 401 - -
Ahy16g0139 525 CDD KH-I 404 467 - -
Ahy16g0139 525 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 57 502 - -
Ahy16g0139 525 MobiDBLite consensus disorder prediction 1 122 - -
Ahy16g0139 525 ProSiteProfiles Type-1 KH domain profile. 402 466 - -
Ahy16g0139 525 CDD PCBP_like_KH 130 199 - -
Ahy16g0139 525 ProSiteProfiles Type-1 KH domain profile. 218 287 - -
Ahy16g0139 525 Gene3D K Homology domain, type 1 391 478 IPR036612 GO:0003723
Ahy16g0139 525 MobiDBLite consensus disorder prediction 79 96 - -
Ahy16g0139 525 Gene3D - 128 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0139 Ahy-Chr16 1449804 1454401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0139 K21444 - gmx:100799901 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0139 16 1449804 1454401 Ahy6g1191 6 17483381 17488028 hybridization
Ahy16g0139 16 1449804 1454401 Ahy12g0823 12 15076169 15081622 PCT
Ahy16g0139 16 1449804 1454401 Ahy2g0700 2 11610627 11616363 PCT
Ahy12g0823 12 15076169 15081622 Ahy16g0139 16 1449804 1454401 PCT
Ahy2g0700 2 11610627 11616363 Ahy16g0139 16 1449804 1454401 PCT