Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0478 ATGTCAAGCACTGTGCTCAAGCAATCCAATACAACAAAGTTTTTAAATTATAAAACCAGTAACCACACTCTCAAGATGCATAGAACGTTGGGCTCTTTGGTAGCTGAAGTTGCAGGGAAGATGAAAGCAATGTGGTTATGTCCAAAGGTTTCGGGTTTTGATCCTTCTGAAAGATGGGGTCACTCTGCTTGCTTCTTCAATGGCCTTATGTATGTCTTTGGGGGCTGTTGTGGAGGGATGCATTTCAGTGATGTTCTCACTTTGGACCTTGATAAAATGGTTTGGAGGAAGGTCGCAACCACAGGCGAAAATCCAGGTCCTAGGGACAGCCATAGTGCTGTTATTGTAGGCCATAAGATGATAGTGTTTGGTGGCAGCAATGGATTCAAGAAGGTGAATCATATTCATATTCTTGATCTTGTCACCAAAGTTTGGGTTAGTCCTGAATGCAAAGGGACACCTCCTTCGCCCCGGGAGAGCCACACGGCCGTGCTCGTTGGCGGCTATAGACTAGTGATCTTTGGTGGTAGTGGGGAAGGCAGAGCAAACTATTTGAATGATTTGCACATTCTTGAACTAGGAACCATGAGATGGACTTGCCCTGAGTTGAAAGGTGAATTTCCTGTCCCTAGGGACAGTCATAGTACCATTGCCATTGGGAACAAGCTTATTGTATATGGTGGAGATTCAGGTTATCAGTACCATGGAAACATTGATATTCTTGATATGGAAACAATGACTTGGTCCAAATTGAGAATTCAAGGTTCTTCACCTGGAGTCAGGGCAGGTCATGCTGCAGTAAACATTGGAACCAAGGTCTATATCATTGGAGGGGTTGGAGAAAAACGTTACTATAATGACATTTGGATCTTTGATATATGCACTTGTTCATGGACTCAACTCTATATAACTGGTCAAAAACCACAAGGGCGATTTTCTCATACTGCTGTTGTTATAGACATGGATATTGTCATCTATGGCGGGTGTGGTGAAGATGAAAATCCTCTCAATGAATTGTTAGTTTTGCAGCATGAAGCAGAGCCAAATCCACGTTACAACGCGAAAACTATGTTGATGGGGTCTAATGTGAAAGAAGGAGGAGCTTATGACTTTGATTCAGGTACTTCACAACAGAAGAGGAGGAGAGTTTCTACTACGAAGGTTTGGGATGTTGATTCTGAACAAGAAGAACACTCTCTTTCACTATCACAGCATTCATCACCATCTCAATCTGATCAAGAACAGACTCTTGGTCAAAGATCAAATGCTTCTGTCACCGATTCGCAGCAGCGTCTTCTGTTCAAACAGATGAATCAAACACCAACCAATTGTCCATACACCAATGACTTGAGTAACAAGAAATCTATGAAGGATATCACTCAGGGAAATCCACAAAATCTTCCTTCTCTAGTTAATCAGCCAAAGCAAGAACAGTGCCACCTGATTGGTGCTGAAGTTCGAGGTAAAATAGATGGAGCCTTTGACTCAGGGTTACTCATGACTGCATCCGTGAATGGAGAGATTTTCAGAGGGGTCTTATTTGCTCCGGCAGTAAAGGTGGTTGAAACAAATTGCTCTCTAACTACTCAAACTCAACCACCATTTGTGAACTCCAACTCAGATCATTCCCCACAAATCAGGCGAGGCGCTCGTTCGTCGATACTATTCAAGGAGCATAGAGCAAGTCAGAGTGATCTTGAAGGGTTGCTTTTGACACTTGGAGGACCTGCTAGCGCAAATAATCCTGAGGAGGTAGATTATTTAGGAAGCAAATAA 1776 0.4291 MSSTVLKQSNTTKFLNYKTSNHTLKMHRTLGSLVAEVAGKMKAMWLCPKVSGFDPSERWGHSACFFNGLMYVFGGCCGGMHFSDVLTLDLDKMVWRKVATTGENPGPRDSHSAVIVGHKMIVFGGSNGFKKVNHIHILDLVTKVWVSPECKGTPPSPRESHTAVLVGGYRLVIFGGSGEGRANYLNDLHILELGTMRWTCPELKGEFPVPRDSHSTIAIGNKLIVYGGDSGYQYHGNIDILDMETMTWSKLRIQGSSPGVRAGHAAVNIGTKVYIIGGVGEKRYYNDIWIFDICTCSWTQLYITGQKPQGRFSHTAVVIDMDIVIYGGCGEDENPLNELLVLQHEAEPNPRYNAKTMLMGSNVKEGGAYDFDSGTSQQKRRRVSTTKVWDVDSEQEEHSLSLSQHSSPSQSDQEQTLGQRSNASVTDSQQRLLFKQMNQTPTNCPYTNDLSNKKSMKDITQGNPQNLPSLVNQPKQEQCHLIGAEVRGKIDGAFDSGLLMTASVNGEIFRGVLFAPAVKVVETNCSLTTQTQPPFVNSNSDHSPQIRRGARSSILFKEHRASQSDLEGLLLTLGGPASANNPEEVDYLGSK* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0478 591 PANTHER OS01G0300900 PROTEIN 476 538 - -
Ahy6g0478 591 PANTHER OS01G0300900 PROTEIN 368 474 - -
Ahy6g0478 591 SUPERFAMILY Kelch motif 54 251 IPR015915 GO:0005515
Ahy6g0478 591 Gene3D - 45 202 IPR015915 GO:0005515
Ahy6g0478 591 PANTHER KELCH REPEAT DOMAIN 32 356 - -
Ahy6g0478 591 PANTHER KELCH REPEAT DOMAIN 476 538 - -
Ahy6g0478 591 PANTHER OS01G0300900 PROTEIN 32 356 - -
Ahy6g0478 591 PANTHER KELCH REPEAT DOMAIN 368 474 - -
Ahy6g0478 591 Pfam Galactose oxidase, central domain 68 114 - -
Ahy6g0478 591 Pfam Galactose oxidase, central domain 170 219 - -
Ahy6g0478 591 SMART kelc_smart 69 118 IPR006652 GO:0005515
Ahy6g0478 591 SMART kelc_smart 222 271 IPR006652 GO:0005515
Ahy6g0478 591 SMART kelc_smart 272 321 IPR006652 GO:0005515
Ahy6g0478 591 MobiDBLite consensus disorder prediction 368 471 - -
Ahy6g0478 591 MobiDBLite consensus disorder prediction 400 471 - -
Ahy6g0478 591 Gene3D - 203 416 IPR015915 GO:0005515
Ahy6g0478 591 MobiDBLite consensus disorder prediction 383 399 - -
Ahy6g0478 591 Pfam Galactose oxidase, central domain 261 308 - -
Ahy6g0478 591 Pfam Galactose oxidase, central domain 310 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0478 Ahy-Chr6 5816667 5820893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0478 197 342 Acyl Lipid Metabolism Gene Families AT3G05420 28.025 1.05e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0478 K20285 - gmx:100801275 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0882 16 15833909 15837403 Ahy6g0478 6 5816667 5820893 hybridization
Ahy6g0478 6 5816667 5820893 Ahy19g1381 19 31165801 31170039 PCT
Ahy6g0478 6 5816667 5820893 Ahy9g1105 9 24827292 24831468 PCT
Ahy19g1381 19 31165801 31170039 Ahy6g0478 6 5816667 5820893 PCT
Ahy9g1105 9 24827292 24831468 Ahy6g0478 6 5816667 5820893 PCT