Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0882 ATGTCAAGCACTGTGCTCAAGCAATCCAATACAAGAAAGTTTTTAAATTATAAAACCAGTAACCACACTCTCAAGATGCATAGAACGTTGGGCTCTTTGGGAGCTGAAGTTGCAGGGAAGATGAAAGCAATGTGGTTATGTCCAAAGGTTTCGGGTTTTGATCCTTCTGAAAGATGGGGTCACTCTGCTTGCTTCTTCAATGGCCTTATGTATGTCTTTGGGGGATGTTGTGGAGGGATGCATTTCAGTGATGTTCTCACTTTGGACCTTGATAAAATGGTTTGGAGGAAGGTCGCAACCACAGGCGAAAATCCAGGTCCTAGGGACAGCCATAGTGCTGTTATTGTAGGCCATAAGATGATAGTGTTTGGTGGCAGCAATGGATTCAAGAAGGTGAATCATATTCATATTCTTGATCTTGTCACCAAAGTGTGGGTTAGTCCTGAATGCAAAGGGACACCTCCTTCGCCCCGGGAGAGCCACACGGCCGTGCTCGTTGGCGGCTATAGACTAGTGATCTTTGGTGGCAGTGGGGAAGGCAGAGCAAACTATTTGAATGATTTGCACATTCTTGAACTAGGAACCATGAGATGGACTTGCCCTGAGTTGAAAGGTGAATTTCCTGTCCCTAGGGACAGTCATAGTACCATTGCCATTGGGAACAAGCTTATTGTATATGGTGGAGATTCAGGTTATCAGTACCATGGAAACATTGATATTCTTGATATGGAAACAATGACTTGGTCTAAATTGAGAATTCAAGGTTCTTCACCAGGAGTCAGGGCAGGTCATGCTGCAGTAAACATTGGAACCAAGGTCTATATCATTGGAGGGGTTGGAGAAAAACGTTACTATAATGACATTTGGATCTTTGATATATGCACTTGTTCATGGACTCAACTCTATATAACTGGTCAAAGACCACAAGGGCGATTTTCTCATACTGCTGTTGTTATAGACATGGATATTGTCATCTATGGGGGGTGTGGTGAAGATGAAAATCCTCTCAATGAATTGTTAGTTTTGCAGCATGAAGCAGAGCCAAACCCACGTTACAACGCGAAAACTATGTTGATGGGGTCTAATGTGAAAGAAGGAGGAGCTTATGACTTTGATTCAGGTACTTCACAACAGAAGAGGAGGAGAGTTTCTACTACGAAGGTTTGGGATGTTGATTCTGAACAAGAAGAACACTCTCTCTCACTATCACAGCATTCATCACCATCTCAATCTGATCAAGAACAGACTCTTGGTCAAAGATCAAATGCTTCTGTCACCGATTCGCAGCAGCGTCTTCTGTTCAAACAGATGAATCAAACCCCAACCAATTGTCAATACAACAATGACTTGAGTAACAAGAAATCTATGAAGGATATCACTCAGGGAAATCCGCAAAATCTTCCTTCTCTAGTTCATCAGCCAAAGCAAGAACAGTGCCACCTGATTGGTGCTGAAGTTCGAGGTAAAATAGATGGAGCCTTTGACTCAGGTTTACTCATGACTGCATCCGTGAATGGAGAGATTTTCAGAGGGGTCTTATTTGCTCCGATGCAGCAGGCAGTAAAGGTGGTGGAAACAAATTGCTCTCTAACTACTCAAACTCAACCACCATTTGTGAACTCCAACTCAGATCATTCCCCACAAATCAAGCGAGGCGCTCGGTCGTCGATACTATTCAAGGAGCATAGAGCAAGTAAGAGTGATCTTGAAGGGTTGCTTTTGACACTTGGAGGACCTGCTAGCGCAAATAATCCTGAGGAGGTAGATTATTTAGGAAGCAAATAA 1785 0.4319 MSSTVLKQSNTRKFLNYKTSNHTLKMHRTLGSLGAEVAGKMKAMWLCPKVSGFDPSERWGHSACFFNGLMYVFGGCCGGMHFSDVLTLDLDKMVWRKVATTGENPGPRDSHSAVIVGHKMIVFGGSNGFKKVNHIHILDLVTKVWVSPECKGTPPSPRESHTAVLVGGYRLVIFGGSGEGRANYLNDLHILELGTMRWTCPELKGEFPVPRDSHSTIAIGNKLIVYGGDSGYQYHGNIDILDMETMTWSKLRIQGSSPGVRAGHAAVNIGTKVYIIGGVGEKRYYNDIWIFDICTCSWTQLYITGQRPQGRFSHTAVVIDMDIVIYGGCGEDENPLNELLVLQHEAEPNPRYNAKTMLMGSNVKEGGAYDFDSGTSQQKRRRVSTTKVWDVDSEQEEHSLSLSQHSSPSQSDQEQTLGQRSNASVTDSQQRLLFKQMNQTPTNCQYNNDLSNKKSMKDITQGNPQNLPSLVHQPKQEQCHLIGAEVRGKIDGAFDSGLLMTASVNGEIFRGVLFAPMQQAVKVVETNCSLTTQTQPPFVNSNSDHSPQIKRGARSSILFKEHRASKSDLEGLLLTLGGPASANNPEEVDYLGSK* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0882 594 SUPERFAMILY Kelch motif 54 251 IPR015915 GO:0005515
Ahy16g0882 594 PANTHER KELCH REPEAT DOMAIN 368 477 - -
Ahy16g0882 594 PANTHER KELCH REPEAT DOMAIN 476 535 - -
Ahy16g0882 594 PANTHER OS01G0300900 PROTEIN 368 477 - -
Ahy16g0882 594 PANTHER OS01G0300900 PROTEIN 476 535 - -
Ahy16g0882 594 PANTHER KELCH REPEAT DOMAIN 32 356 - -
Ahy16g0882 594 MobiDBLite consensus disorder prediction 368 467 - -
Ahy16g0882 594 MobiDBLite consensus disorder prediction 400 467 - -
Ahy16g0882 594 Pfam Galactose oxidase, central domain 310 342 - -
Ahy16g0882 594 Pfam Galactose oxidase, central domain 261 308 - -
Ahy16g0882 594 Gene3D - 202 424 IPR015915 GO:0005515
Ahy16g0882 594 Pfam Galactose oxidase, central domain 68 114 - -
Ahy16g0882 594 Pfam Galactose oxidase, central domain 170 219 - -
Ahy16g0882 594 Gene3D - 45 201 IPR015915 GO:0005515
Ahy16g0882 594 PANTHER OS01G0300900 PROTEIN 32 356 - -
Ahy16g0882 594 SMART kelc_smart 272 321 IPR006652 GO:0005515
Ahy16g0882 594 SMART kelc_smart 69 118 IPR006652 GO:0005515
Ahy16g0882 594 SMART kelc_smart 222 271 IPR006652 GO:0005515
Ahy16g0882 594 MobiDBLite consensus disorder prediction 383 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0882 Ahy-Chr16 15833909 15837403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0882 197 342 Acyl Lipid Metabolism Gene Families AT3G05420 28.025 1.57e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0882 K20285 - gmx:100801275 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0882 16 15833909 15837403 Ahy16g0882 16 15833909 15837403 ECH
Ahy16g0882 16 15833909 15837403 Ahy6g0478 6 5816667 5820893 hybridization
Ahy16g0882 16 15833909 15837403 Ahy19g1381 19 31165801 31170039 PCT
Ahy16g0882 16 15833909 15837403 Ahy9g1105 9 24827292 24831468 PCT
Ahy19g1381 19 31165801 31170039 Ahy16g0882 16 15833909 15837403 PCT
Ahy9g1105 9 24827292 24831468 Ahy16g0882 16 15833909 15837403 PCT