Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2098 ATGGCATCAACAACAACAGAAAGTGCAACAAGGTATGCAGTGGTGACAGGAGCAAACAAAGGAATAGGATTTGGGATATGTAAGCAATTGGCTTCTAATGGGATCACAGTGATCTTAACAGCAAGAGATGAAAAAAGGGGTCATGAAGCTCTTCAGAATCTCAAAGATTTAGGTTTATCTGGCCATATTCTTTTTCATCAGCTTGATGTCACTGATGCTAACAGCATAGCATCCCTTGTAAATTTCATCAAAATCCACTTCGGAAAACTTGATATCCTGGTGAATAATGCAGGAATTTTCGGTGCCGATGTTGACTACAGTGCTTTCGAAGTCTTACTTAGTGGTGTGGAGACTCATGATACTATTGATTGGAGAAAATATGAAACTCAAAATTATGAATTAGTAGAAGCAGCCATTAGAACAAACTACTATGGAGTCAAAGGAATGTGTGAAGCACTTATTCCCCTTCTAGAGTTGTCAGACTCGCCAAGAATCGTTGGTGTTTCCTCCTCCTTAGGGAAGTTGGAGAACCTACCAAATGGATGGGCTAAAGAAATTCTAAGTGATGCTGAAAGCTTAACAGAAGAAAAAGTAGATGAAGTTATGAATGAATATCTAAAGGATTTTGAAGAGGGTTTATTAGAAAGCAAAGGATGTTGGCCTCTTGCACATTCTGCATACATAGTCTCAAAAGCTGGTGTGAATGCATACACAAGGATTCTTGCAAAGAAGCATCCATGTTTTTGCATCAATGCTGTTTGTCCTGGCTATGTCAAAACTGATATCAACAACAATACTGGTCGCCTTAGTGTTGATGAAGGTGCTCAAAGTGCTGTTAGGTTGGCTCTCCTACCCAATGGGGGTCCTTCTGGTCTTTTCCTCTTTAGAAGTGAAGTTGATCCATTTTGA 909 0.396 MASTTTESATRYAVVTGANKGIGFGICKQLASNGITVILTARDEKRGHEALQNLKDLGLSGHILFHQLDVTDANSIASLVNFIKIHFGKLDILVNNAGIFGADVDYSAFEVLLSGVETHDTIDWRKYETQNYELVEAAIRTNYYGVKGMCEALIPLLELSDSPRIVGVSSSLGKLENLPNGWAKEILSDAESLTEEKVDEVMNEYLKDFEEGLLESKGCWPLAHSAYIVSKAGVNAYTRILAKKHPCFCINAVCPGYVKTDINNNTGRLSVDEGAQSAVRLALLPNGGPSGLFLFRSEVDPF* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2098 302 Gene3D - 2 302 - -
Ahy4g2098 302 CDD carb_red_PTCR-like_SDR_c 11 302 IPR045313 GO:0016616
Ahy4g2098 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Ahy4g2098 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 227 246 IPR002347 -
Ahy4g2098 302 PRINTS Glucose/ribitol dehydrogenase family signature 227 246 IPR002347 -
Ahy4g2098 302 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Ahy4g2098 302 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Ahy4g2098 302 PRINTS Glucose/ribitol dehydrogenase family signature 246 263 IPR002347 -
Ahy4g2098 302 PANTHER (+)-NEOMENTHOL DEHYDROGENASE-RELATED 7 302 - -
Ahy4g2098 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 287 IPR036291 -
Ahy4g2098 302 Pfam short chain dehydrogenase 12 175 IPR002347 -
Ahy4g2098 302 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2098 Ahy-Chr4 114893158 114922991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2098 14 267 Acyl Lipid Metabolism Gene Families AT1G24360 22.179 2.68e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2098 K15095 - gmx:106797124 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2380 14 126608166 126621413 Ahy4g2098 4 114893158 114922991 hybridization
Ahy4g2098 4 114893158 114922991 Ahy12g0017 12 984155 986654 PCT
Ahy4g2098 4 114893158 114922991 Ahy2g0526 2 7506603 7530316 PCT
Ahy12g0629 12 10202881 10206256 Ahy4g2098 4 114893158 114922991 PCT
Ahy2g0527 2 7539003 7544037 Ahy4g2098 4 114893158 114922991 PCT