Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1183 ATGCCGCCGGCTCTGATGAACCCGCTGATGCCGCCGCCGCCACCTCCGTCGGTGTCGGTGTCCGCGCCGCCGGAGCTTGAAGGCTTCGACGATGTTTCCGGGAGATCGGTGACTCAAAATAGGCGATTCGGTGATCTGAGAGGGTTGCAGTGGCGTGTTGATCTTGGGGTTTTGCCTTCAGAGTCTTCAACTTCCATTGATGATCTTCGTAGGGTCACCGCTAACTGTAGAAGGAGGTATGCGAATCTGAGAAGGCGTCTTCTGGTTGAACCGCATATCCCGAAGGATGGAAGTAACTCACCCGATCTTACCATGGATAATCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTCCGCAATGCGGAGCTAGAGAGAATGGTTGATCAGGATTTATCACGTTTATATCCAGAACATGGGAATTATTTCCAGACACCAGGATGTCAAGGCATTTTAAGACGCATTTTATTACTTTGGTGTCTCAGGCACCCAGAATGTGGTTATAGACAAGGAATGCACGAGTTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATGTGGAGCGTCTTTCAGAAGTTCGAAAGCTTTATGAAGATATCTTCACCGACAAATTTGATGGCCTTCTATATCAGGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAATCTCAAGACTTGCTGGAGGATGAAATTGGCTCTCATGGAAATGCAAAAGTCAAAAGTCTTGATGAGCTTGATCCTGCATTACAGACCATTGTATTGCTGAGTGATGCTTATGGAGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATGGAACATGATGCTTATTGCATGTTTGATGCTTTAATGAGTGGTGTCCGTGGTTCAGTTGCGATGGCCGATTTCTTCTCTTCCTTCCCTGTAGCAGGGTCGCAAACTGGCCTGCCTCCTGTTATTGAAGCTTCTACTGCATTGTATCATTTGCTGTGTCTTGTGGATTCATCTCTGTATAGCCATCTTTTGGATCTTGGTGTTGAACCCCAATACTTTTCTCTCCGATGGTTGCGAGTTCTATTCGGACGTGAGTTTTCACTTGACAATCTATTGATAATCTGGGATGAGATCTTTGCATCGGATAATAGTAAAGTTGAAAAAAGTGTTGATGACAACATAGACTGGGGTTTGAGGATTTTGCATTCTCCTCGTGGAGCATTTATTGCAGCTATGGCTGTTGCAATGCTACTTCATTTAAGATCTTCACTGCTTGCTACTGAAAATCCTACCACCTGTCTTCAGAGATTATTAAACTTTCCTGAAAACATTAATATTAAAAAGCTGCTGGAGAAGGCCAAATCATTGCAAGCTCGTGCACTAAGTGTTGATATTTCTTCTCCATCACCTTTGATTATAGGATATCATCTCCAAAGTAAATCAGTTATGACGCGATCTCAGACCCTTCCTTCTGAAACTGTGTCTCCAAAAACTCCTGTAAATTTGTTAACTGACAGCTACTGGGAAGAAAAATGGAGGGTTGCACATGAGGCTGAAGAACTTAAGCAAGATGGTATCGAACAACAGATTCCGACTCGGAAAAAGGGCTGGACAGAAAAGGTAAAAAACACACTGAGAAGAGCGGGATCTGATCCACCACCTTCAAGGATTAAGAATGGCAAAAAGGAATCTAAGGTGGTTAGGCGAAACATATTGGAAGCGCTTCATAAGGCACTTGGACCTGAGGAAGAAGCAGAACAAATGGATTGCCATGAAATCCTATGCAAGCAGGAAAATCTTTCTGAAGCAGCTGAAGGTGTGCAGCAAAATGATAACTCTAAAGGCGACAACAGTTACTCATCTGATGATAGATGTCCAAGTGGAAATACAGGGATAGAGGAAAGCTCCTCTGTATATTCTGACTCAACTAGCCCGCCTAATGAGGCCAATGATCATGAAATTACCTCGCAGGGAAGTAGTGTTGCCTCTAATTTATATCTTGACGAATGCGATGAAACTGCAGATACCAGTCTCAGTGATCCACCTCTTCCAGTCTCTGATCATCCTGAGAGCATACCTGAAACATCAGAGTCCACTGATGTTGATGTTGATAAATCTGAGAACATACCTCAGATGTCAGGGTGCAATAATAATGATCCAGGAAATTCTGCTACACATCCCAAGGAGAAAAAGCAGAATAAATTTCAGTGGTTTTGGAAGTTTGGACGGAATACTGTTGAGGGTATATCGGGGAAAGTAGGAGCTGCTTCTGAACCTACAAAATCCACCAGCAGCTGTAGTAACCAAAGTAATTCGCAACCACCTGTCTCTTCTACCACCAGTGAGCATTTCACTTCTGTTAGTAGCAAAGGAGATTCTGTAGACCAGAATGTGATGGGCACTTTGAAGAATATTGGACAGTCTATGCTTGACCATATCCAGGTAATTGAATCTGTTTTCCAACAAGACAGGAACCAGGGAGTCTCAGTGGAGAACTTATCTAAAAATATTCTTGTTGGCAAAGGGCAGGTTACTGCCATGGCAGCTCTCAAGGAGCTTCGGAAGATTAGCAATATTCTGTCTGAGATGTGA 2580 0.4329 MPPALMNPLMPPPPPPSVSVSAPPELEGFDDVSGRSVTQNRRFGDLRGLQWRVDLGVLPSESSTSIDDLRRVTANCRRRYANLRRRLLVEPHIPKDGSNSPDLTMDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDVERLSEVRKLYEDIFTDKFDGLLYQENDLSYSFDFRKSQDLLEDEIGSHGNAKVKSLDELDPALQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMSGVRGSVAMADFFSSFPVAGSQTGLPPVIEASTALYHLLCLVDSSLYSHLLDLGVEPQYFSLRWLRVLFGREFSLDNLLIIWDEIFASDNSKVEKSVDDNIDWGLRILHSPRGAFIAAMAVAMLLHLRSSLLATENPTTCLQRLLNFPENINIKKLLEKAKSLQARALSVDISSPSPLIIGYHLQSKSVMTRSQTLPSETVSPKTPVNLLTDSYWEEKWRVAHEAEELKQDGIEQQIPTRKKGWTEKVKNTLRRAGSDPPPSRIKNGKKESKVVRRNILEALHKALGPEEEAEQMDCHEILCKQENLSEAAEGVQQNDNSKGDNSYSSDDRCPSGNTGIEESSSVYSDSTSPPNEANDHEITSQGSSVASNLYLDECDETADTSLSDPPLPVSDHPESIPETSESTDVDVDKSENIPQMSGCNNNDPGNSATHPKEKKQNKFQWFWKFGRNTVEGISGKVGAASEPTKSTSSCSNQSNSQPPVSSTTSEHFTSVSSKGDSVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRNQGVSVENLSKNILVGKGQVTAMAALKELRKISNILSEM* 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1183 859 SMART tbc_4 33 408 IPR000195 -
Ahy4g1183 859 MobiDBLite consensus disorder prediction 752 791 - -
Ahy4g1183 859 MobiDBLite consensus disorder prediction 749 791 - -
Ahy4g1183 859 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 790 - -
Ahy4g1183 859 Pfam Rab-GTPase-TBC domain 127 186 IPR000195 -
Ahy4g1183 859 Pfam Rab-GTPase-TBC domain 277 378 IPR000195 -
Ahy4g1183 859 ProSiteProfiles TBC/rab GAP domain profile. 41 378 IPR000195 -
Ahy4g1183 859 MobiDBLite consensus disorder prediction 1 21 - -
Ahy4g1183 859 Gene3D - 317 459 - -
Ahy4g1183 859 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 45 338 IPR035969 -
Ahy4g1183 859 Coils Coil 66 86 - -
Ahy4g1183 859 MobiDBLite consensus disorder prediction 1 32 - -
Ahy4g1183 859 MobiDBLite consensus disorder prediction 599 655 - -
Ahy4g1183 859 MobiDBLite consensus disorder prediction 669 726 - -
Ahy4g1183 859 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 790 - -
Ahy4g1183 859 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 314 453 IPR035969 -
Ahy4g1183 859 MobiDBLite consensus disorder prediction 539 560 - -
Ahy4g1183 859 MobiDBLite consensus disorder prediction 701 719 - -
Ahy4g1183 859 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 110 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1183 Ahy-Chr4 31737815 31742270 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1183 K18469 - gmx:100812967 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1273 14 29398354 29402806 Ahy4g1183 4 31737815 31742270 hybridization
Ahy11g3071 11 148371057 148375845 Ahy4g1183 4 31737815 31742270 PCT
Ahy1g1902 1 95660630 95665567 Ahy4g1183 4 31737815 31742270 PCT
Ahy4g1183 4 31737815 31742270 Ahy11g3071 11 148371057 148375845 PCT
Ahy4g1183 4 31737815 31742270 Ahy1g1902 1 95660630 95665567 PCT