Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4194 ATGAGAACAAGAAGAGGATTGTGTTATTCTGCACCTGGAGTAGTAACAAGGATGTGTTCCGTAGGGGTTGGGAAGAGAAAGAACAACAAGTTGCAGCATAATGTTTACGGAGACTCTAATATTTATAGCCTCAGGAAAAGGCACAAGAGGTTACCGGAAAAGGCCGCCGGCGAATGCGATTTTTTCGAGTCTTTGCCGGACGACCTTGTAATCTCTATCTTCTGCAAGCTTAGCTCCTCCGCTACTTCCCCTTCCGATTTTGTCAATGTTTTAATCACATGCAGGAGATTAAACAGTTTAGGTCTCCATTCTCTTGTGTTATCGAAAGCATCTCCGAGGACTTTCTCTATTAGAGCAAAGAACTGGTGCGATTCGGCGCACCGGTTCCTCAAACAGTGTGCAGATGCAGGAAATGTTGAAGCATGCTATACTCTAGGCATGATTCGGTTCTACTGTTTGCAGAACAGAGGGAGCGGGGCTTCACTCATGGCCAAGGCAGCCATGAACTCTCACGCACGAGCTCTCTATTCGCTCGCCGTTATACAGTTCAACGGTAGCGGAGGCACCAAGAACGACAAGGACCTCCGTGCCGGAGTTGCCTTGTGCGCACGCGCCGCCTTCCTCGGCCACGTCGACGCGCTGCGGGAGCTAGGCCACTGCCTTCAGGATGGATACGGCGTTCGCCAGAACATCGCGGAGGGGAGGCGCTTCCTTGTTCAGGCCAACGCCAGGGAACTCGCCGCCGTGATCTCCGCCGGAGCTGCTGCGCGCCAGTGGCTGACATGGAACATCCACCCGCTCCGCCAGTTCGCCGGGTCAGCGGCAGGTTGCCCGCTGCTGAGCGATTTCGGGTGCAATGTTCCGATGCCGGAGGCACATCCGGCGAGCAGGTTCCTGTCGGAATGGTTCGCGGCTCGGGACGCGTCTCCCGGTCCGGGACTGAGGTTGTGCTCTCATGCCGGTTGCGGTCGGCCAGAGACGAGGAAGCACGAGTTTCGAAGGTGCTCGGTGTGTGGCGCGGTGAACTATTGTTCACGCGCCTGCCAGGCGCTTGATTGGAAGTTTCGGCACAAGGTGGAGTGCACCCCCGTGGAGCGGTGGCTCGAGGACGACGGAGATGACGTCGTTGATGACGGCGTAGACGCTGACGCCGTGATGGCGGTGGATAGTTAG 1173 0.5635 MRTRRGLCYSAPGVVTRMCSVGVGKRKNNKLQHNVYGDSNIYSLRKRHKRLPEKAAGECDFFESLPDDLVISIFCKLSSSATSPSDFVNVLITCRRLNSLGLHSLVLSKASPRTFSIRAKNWCDSAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAMNSHARALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVISAGAAARQWLTWNIHPLRQFAGSAAGCPLLSDFGCNVPMPEAHPASRFLSEWFAARDASPGPGLRLCSHAGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKVECTPVERWLEDDGDDVVDDGVDADAVMAVDS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4194 390 Gene3D Tetratricopeptide repeat domain 111 262 IPR011990 GO:0005515
Ahy3g4194 390 ProSiteProfiles Zinc finger MYND-type profile. 319 361 IPR002893 -
Ahy3g4194 390 Pfam MYND finger 321 361 IPR002893 -
Ahy3g4194 390 SUPERFAMILY HCP-like 122 241 - -
Ahy3g4194 390 PANTHER MYND DOMAIN-CONTAINING 43 390 IPR044508 -
Ahy3g4194 390 SUPERFAMILY HIT/MYND zinc finger-like 316 366 - -
Ahy3g4194 390 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 43 390 - -
Ahy3g4194 390 Gene3D - 312 365 - -
Ahy3g4194 390 SUPERFAMILY F-box domain 53 117 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4194 Ahy-Chr3 141926730 141928580 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4194 - - gmx:100798174 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4477 13 144939340 144941211 Ahy3g4194 3 141926730 141928580 hybridization
Ahy20g0959 20 13559270 13561115 Ahy3g4194 3 141926730 141928580 PCT
Ahy10g0675 10 7324101 7325991 Ahy3g4194 3 141926730 141928580 PCT
Ahy3g4194 3 141926730 141928580 Ahy20g0959 20 13559270 13561115 PCT
Ahy3g4194 3 141926730 141928580 Ahy10g0675 10 7324101 7325991 PCT