Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4477 ATGAGAACAAGAAGAGGATTGTGTTATTCTGCACCTGGAGTAGTAACAAGGATGTGTCCCGTAGGGGTTGGGAAGAGAAAGAGCAACAAGTTGCAGCATAATGTTTCCGGAGACTCTAATATTTATAGCCTCAGGAAAAGGCACAAGAGGTTGCCGGAAAAGGCCGCCGACGAATGCGATTTTTTCGAGTCTTTGCCGGACGACCTTGTAATCTCTATCTTCTGCAAGCTTAGCTCCTCCGCTACTTCCCCTTCCGATTTTGTCAATGTTTTAATCACATGCAAGAGATTAAACAGTTTAGGTCTCCATTCTCTTGTGTTATCGAAAGCATCTCCGAGGACTTTCTCTATTAGAGCAAAGAACTGGTGCGATTCGGCGCACCGGTTCCTCAAACAGTGTGCAGATGCAGGAAATGTTGAAGCATGCTATACTCTAGGCATGATTCGGTTCTACTGTTTGCAGAACAGAGGGAGCGGGGCTTCGCTCATGGCCAAGGCAGCCATGAACTCTCACGCGCGAGCTCTCTATTCGCTTGCCGTTATACAGTTCAACGGTAGCGGAGGCACCAAGAACGACAAAGACCTCCGTGCCGGAGTTGCCTTGTGCGCACGCGCCGCCTTCCTCGGCCACGTCGACGCGCTGCGGGAGCTAGGCCACTGCCTTCAGGATGGATACGGCGTTCGCCAGAACATCGCGGAGGGGAGGCGCTTCCTTGTTCAGGCCAACGCCAGGGAACTCGCCGCCGTGATCTCCGCCGGAGCTGCTGCGCGCCAGTGGCTGACATGGAACATCCACCCGCTCCGCCAGTTCGCCGGGTCAGCGGCAGGTTGCCCGCTGCTGAGCGACTTCGGGTGCAATGTTCCGATGCCGGAGGCACATCCGGCGAGCAGGTTCCTGTCGGAGTGGTTCGCGGCTCGGGACGCGTCTGCCGGTCCGGGACTGAGGTTGTGCTCTCATGCCGGTTGCGGTCGGCCAGAGACGAGGAAGCACGAGTTTCGAAGGTGCTCGGTGTGTGGCGCGGTGAACTATTGTTCACGCGCCTGCCAGGCGCTTGATTGGAAGTTTCGGCACAAGGCGGAGTGCACCCCCGTGGAGCGGTGGCTCCAGGACGACGGGGATGACGTCGTTGATGACGACGTAGGCGCTGACGCCGTGATGGCGGTGGATAGTTAG 1173 0.5686 MRTRRGLCYSAPGVVTRMCPVGVGKRKSNKLQHNVSGDSNIYSLRKRHKRLPEKAADECDFFESLPDDLVISIFCKLSSSATSPSDFVNVLITCKRLNSLGLHSLVLSKASPRTFSIRAKNWCDSAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAMNSHARALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVISAGAAARQWLTWNIHPLRQFAGSAAGCPLLSDFGCNVPMPEAHPASRFLSEWFAARDASAGPGLRLCSHAGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKAECTPVERWLQDDGDDVVDDDVGADAVMAVDS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4477 390 ProSiteProfiles Zinc finger MYND-type profile. 319 361 IPR002893 -
Ahy13g4477 390 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 43 390 - -
Ahy13g4477 390 SUPERFAMILY HIT/MYND zinc finger-like 316 366 - -
Ahy13g4477 390 Gene3D - 309 365 - -
Ahy13g4477 390 PANTHER MYND DOMAIN-CONTAINING 43 390 IPR044508 -
Ahy13g4477 390 Pfam MYND finger 321 361 IPR002893 -
Ahy13g4477 390 SUPERFAMILY HCP-like 122 241 - -
Ahy13g4477 390 SUPERFAMILY F-box domain 53 117 IPR036047 GO:0005515
Ahy13g4477 390 Gene3D Tetratricopeptide repeat domain 110 262 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4477 Ahy-Chr13 144939340 144941211 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4477 - - gmx:100798174 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4477 13 144939340 144941211 Ahy3g4194 3 141926730 141928580 hybridization
Ahy20g0959 20 13559270 13561115 Ahy13g4477 13 144939340 144941211 PCT
Ahy10g0675 10 7324101 7325991 Ahy13g4477 13 144939340 144941211 PCT
Ahy13g4477 13 144939340 144941211 Ahy20g0959 20 13559270 13561115 PCT
Ahy13g4477 13 144939340 144941211 Ahy10g0675 10 7324101 7325991 PCT