Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4172 ATGGCAACCCTGGCCCGTTCAAACTCCCTCCTCCTCCACACTGCCGGCGCCGGAGCTGGAATTGCTGCCCACTGCCGCACCCACCTCCTACGCCAATGGGTTCCAATCCACGCAACCAAACTCAACCCCCTCTCTCTACGCTGCAACACATCCTCCTCTCCCACTGCTGGAGGTGTAAGAGCTCAGGTTGCAACTGAGGCGGAAGCAGGAATTCCAGCTAGCCAGAATGCGGAAGCGCCCGTTGTAGTGGTCACCGGAGCTTCCAGAGGCATCGGTCGAGCAATTGCTCTCTCCTTGGGTAAATCTGGTTGCAAGGTGCTGGTCAACTATGCAAGGTCATCCAAGGAAGCCGAGGAGGTTTCCAAGCAGATCCAGGAATTCGGTGGACAAGCTCTTACATTTGGTGGAGATGTTTCCAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCTGTTGATACTTGGGGAACAGTTGACGTGTTGGTAAATAATGCAGGAATTACTCGAGATGGCTTGTTGATGCGGATGAAGAAATCACAATGGCAGGAGGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACCCAGGCAGCAGCTAAAATTATGATGAAGAAGAAGAAGGGAAGGATAATCAATATTGCATCAGTTGTTGGTTTGGTTGGGAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAAACAGTTGCAAAGGAATATGCTAGCAGAAGCCTCACTGTTAATGCAGTTGCCCCAGGGTTTATTGCATCTGACATGACTGCCAAGCTAAGCGAAGACATTGAGAAAAAGATTCTGGAGACAATTCCTTTAGGGAGATATGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCCCTCAATCCTTCTGCTAGTTACATCACTGGCCAGGTGTTCACTATTGATGGAGGCATGGTGATGTAA 969 0.4861 MATLARSNSLLLHTAGAGAGIAAHCRTHLLRQWVPIHATKLNPLSLRCNTSSSPTAGGVRAQVATEAEAGIPASQNAEAPVVVVTGASRGIGRAIALSLGKSGCKVLVNYARSSKEAEEVSKQIQEFGGQALTFGGDVSNEADVESMIKTAVDTWGTVDVLVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRSLTVNAVAPGFIASDMTAKLSEDIEKKILETIPLGRYGQPEEVAGLVEFLALNPSASYITGQVFTIDGGMVM* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4172 322 Pfam Enoyl-(Acyl carrier protein) reductase 86 320 - -
Ahy3g4172 322 PRINTS Glucose/ribitol dehydrogenase family signature 229 248 IPR002347 -
Ahy3g4172 322 PRINTS Glucose/ribitol dehydrogenase family signature 156 167 IPR002347 -
Ahy3g4172 322 PRINTS Glucose/ribitol dehydrogenase family signature 283 303 IPR002347 -
Ahy3g4172 322 PRINTS Glucose/ribitol dehydrogenase family signature 203 219 IPR002347 -
Ahy3g4172 322 PRINTS Glucose/ribitol dehydrogenase family signature 81 98 IPR002347 -
Ahy3g4172 322 PRINTS Glucose/ribitol dehydrogenase family signature 250 267 IPR002347 -
Ahy3g4172 322 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 82 321 IPR011284 GO:0004316|GO:0006633|GO:0051287
Ahy3g4172 322 CDD BKR_SDR_c 81 321 - -
Ahy3g4172 322 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 80 260 - -
Ahy3g4172 322 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 216 244 IPR020904 GO:0016491
Ahy3g4172 322 Gene3D - 79 322 - -
Ahy3g4172 322 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 46 322 - -
Ahy3g4172 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 229 248 IPR002347 -
Ahy3g4172 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 167 IPR002347 -
Ahy3g4172 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 217 IPR002347 -
Ahy3g4172 322 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 46 322 - -
Ahy3g4172 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 322 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4172 Ahy-Chr3 141669313 141672070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4172 30 322 Acyl Lipid Metabolism Gene Families AT1G24360 69.728 9.55e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4172 K00059 - gmx:100809809 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4454 13 144664126 144666981 Ahy3g4172 3 141669313 141672070 hybridization
Ahy20g0998 20 14592857 14596385 Ahy3g4172 3 141669313 141672070 PCT
Ahy10g0717 10 8134187 8136424 Ahy3g4172 3 141669313 141672070 PCT
Ahy3g4172 3 141669313 141672070 Ahy20g0998 20 14592857 14596385 PCT
Ahy3g4172 3 141669313 141672070 Ahy10g0717 10 8134187 8136424 PCT