Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4454 ATGGCAACCCTGGCCCGTTCAAACTCCCTCCTCCTCCACACTGCCGGCGCCGGAGCTGGAATTGCTGCCCACTGCCGCACCCACCTCCTACGCCAATGGGTTCCAATCCACGCAACCAAACTCAACCCCCTCTCTCTACACTGCAACACATCCTCCTCTCCCACTGCTGGAGGTGTAAGAGCTCAGGTTGCAACTGAGGCGGAAGCAGGAACTCCAGCTAGCCAGAATGCGGAAGCGCCCGTTGTAGTGGTCACCGGAGCTTCTAGAGGCATCGGTCGAGCAATTGCTCTCTCCTTGGGTAAATCTGGTTGCAAGGTGCTGGTCAACTACGCAAGGTCATCCAAGGAAGCCGAGGAGGTTTCCAAGCAGATCCAGGAATTCGGTGGACAAGCTCTTACATTTGGTGGAGATGTTTCCAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCTGTTGATACTTGGGGAACAGTTGACGTGTTGGTAAATAATGCAGGAATTACTCGAGATGGCTTGTTGATGCGGATGAAGAAATCACAATGGCAGGAGGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACCCAGGCAGCAGCTAAAATTATGATGAAGAAGAAGAAGGGAAGGATAATCAATATTGCATCAGTTGTTGGTTTGGTTGGGAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAAACAGTTGCAAAGGAATATGCTAGCAGAAGCCTCACTGTTAATGCAGTTGCCCCAGGGTTTATTGCATCTGACATGACTGCCAAGCTAAGCGAAGACATTGAGAAAAAGATTCTGGAGACAATTCCTTTAGGGAGATATGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCCCTCAATCCTTCTGCTAGTTACATCACTGGCCAGGTGTTCACTATTGATGGAGGCATGGTGATGTAA 969 0.4861 MATLARSNSLLLHTAGAGAGIAAHCRTHLLRQWVPIHATKLNPLSLHCNTSSSPTAGGVRAQVATEAEAGTPASQNAEAPVVVVTGASRGIGRAIALSLGKSGCKVLVNYARSSKEAEEVSKQIQEFGGQALTFGGDVSNEADVESMIKTAVDTWGTVDVLVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRSLTVNAVAPGFIASDMTAKLSEDIEKKILETIPLGRYGQPEEVAGLVEFLALNPSASYITGQVFTIDGGMVM* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4454 322 MobiDBLite consensus disorder prediction 55 76 - -
Ahy13g4454 322 PRINTS Glucose/ribitol dehydrogenase family signature 229 248 IPR002347 -
Ahy13g4454 322 PRINTS Glucose/ribitol dehydrogenase family signature 156 167 IPR002347 -
Ahy13g4454 322 PRINTS Glucose/ribitol dehydrogenase family signature 283 303 IPR002347 -
Ahy13g4454 322 PRINTS Glucose/ribitol dehydrogenase family signature 203 219 IPR002347 -
Ahy13g4454 322 PRINTS Glucose/ribitol dehydrogenase family signature 81 98 IPR002347 -
Ahy13g4454 322 PRINTS Glucose/ribitol dehydrogenase family signature 250 267 IPR002347 -
Ahy13g4454 322 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 82 321 IPR011284 GO:0004316|GO:0006633|GO:0051287
Ahy13g4454 322 CDD BKR_SDR_c 81 321 - -
Ahy13g4454 322 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 80 260 - -
Ahy13g4454 322 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 216 244 IPR020904 GO:0016491
Ahy13g4454 322 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 44 322 - -
Ahy13g4454 322 Gene3D - 79 322 - -
Ahy13g4454 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 229 248 IPR002347 -
Ahy13g4454 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 167 IPR002347 -
Ahy13g4454 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 217 IPR002347 -
Ahy13g4454 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 322 IPR036291 -
Ahy13g4454 322 Pfam Enoyl-(Acyl carrier protein) reductase 86 320 - -
Ahy13g4454 322 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 44 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4454 Ahy-Chr13 144664126 144666981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4454 30 322 Acyl Lipid Metabolism Gene Families AT1G24360 68.259 3.96e-148 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4454 K00059 - gmx:100809809 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4454 13 144664126 144666981 Ahy3g4172 3 141669313 141672070 hybridization
Ahy20g0998 20 14592857 14596385 Ahy13g4454 13 144664126 144666981 PCT
Ahy10g0717 10 8134187 8136424 Ahy13g4454 13 144664126 144666981 PCT
Ahy13g4454 13 144664126 144666981 Ahy20g0998 20 14592857 14596385 PCT
Ahy13g4454 13 144664126 144666981 Ahy10g0717 10 8134187 8136424 PCT