Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1880 ATGGTTGAAAACTATCTTCCTGCTCCCACATACTTCATCCTTCTCCTAATAACCATAACACGATTGATATCCACCGTTGGCAACAAAACTGAGCATTTGAACAACAACTCCCTCCTCTCATCGGACCTCATCTCCCGCCACAACCTCCTTGACGACCCCGAGTCTCTAGAATCGGCTTCTAGAGACTTCGGCAACCTAGTCCATCACCTCCCACGGGCAGTGTTCCACCCGCGGTCTCCACAAGACATAGCCTCCCTCGTGAAGACTTCGTATGAGAGCCCTGTCCCTTTCACGATATCCGTGAAGGGACAGGGCCACTCCACGAGGGGTCAGGCTATGGCGAGAGGAGGGGTGGTGGTGGACACGAGGGCCCTGAGAGAAGAAAATAATAGTAATAAGAAGAAGAACATTCGCGTGATTTGGAGAGAGGAAGGATACTATGGTGACGTGGGAGGGGAGGCGCTGTGGGCGGATGTGCTGCGGGAGGCGGCGGAGATGGGAGTTGCACCGGCTTCTTGGACGGATTACTTGTACTTGACTGTGGGAGGGACTCTCTCCAATGGCGGCATCAGTGGCCAGAGCTTCAAGTATGGACCCCAAATCAGCATTGTTCATGAAATGGATGTTATCACTGGAAAAGGAGAACTAGTAACATGCTCTTCACACACAAATTCTGAGTTATTTCATGCGGTGCTTGGAGGCTTAGGACAATTTGGCATTATAACAAGGGCAAGAATTGCTCTTCACCCAGCACCAAAAATGGTGAAATGGGTCAGGCTTCTATACAATGACTTTTCTGCTTTTACCAAAGACCAAGAGCGATTAATCTCAATCAATGGAAGGAAACACAATAATAATGATAATAATGATGACAATGTTGCATTGGATTATGTGGAAGGGATGCTACTAATGCACCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAGCCGACCATCCAAGAATCATTTCCCTAGTAACTCAACATAGCATCCTTTATTGTCTTGAATTGGCCAAATATTATGATGAAAAATCTGAAAACAATGTGGACAAGGAAATGCAAGGTTTGCTTGAAGGACTTAGCTATATGCCGGGATTTTATTATGAGAAAAAAGTGTCATATGTTGAGTTCTTGAATAGAGTCAGAAGTGGAGAGTTGAAGCTTCAGTCACAAAGACAATGGGATGTTCCTCATCCATGGCTTAATTTGTTTATACCCAAATCTCAAATCATGGATTTTGATTCCGGCGTATTCAAGAATATCATTTTCAAACGAAACATCACCACAGGACCTGTCTTGATTTACCCCATGAATAGAAGCAAGTGGGACAAAAGAATGTCAGCATCTATACCAGAGGAGGATATCTTTTATACAGTTGGATTTTTGCACTCAAGTGGATTTGATAATTGGAAGGCATTTGATGCTCAAAACAAAGAAATCTTGAAATTTTGTAATGATGCTGGAATTAAGGTTAAGCAATATCTTCCCCACTACAGCACACAAGAAGATTGGACAAAACACTTTGGCCCTAATAAATGGAGGACTTTCTTGGAAAGAAAACTCCAATTTGATCCAAGAATGATTCTATCACCTGGACAGAGAATCTTCAACAAAGATTAA 1629 0.4328 MVENYLPAPTYFILLLITITRLISTVGNKTEHLNNNSLLSSDLISRHNLLDDPESLESASRDFGNLVHHLPRAVFHPRSPQDIASLVKTSYESPVPFTISVKGQGHSTRGQAMARGGVVVDTRALREENNSNKKKNIRVIWREEGYYGDVGGEALWADVLREAAEMGVAPASWTDYLYLTVGGTLSNGGISGQSFKYGPQISIVHEMDVITGKGELVTCSSHTNSELFHAVLGGLGQFGIITRARIALHPAPKMVKWVRLLYNDFSAFTKDQERLISINGRKHNNNDNNDDNVALDYVEGMLLMHQGPINNWRSSFFPLADHPRIISLVTQHSILYCLELAKYYDEKSENNVDKEMQGLLEGLSYMPGFYYEKKVSYVEFLNRVRSGELKLQSQRQWDVPHPWLNLFIPKSQIMDFDSGVFKNIIFKRNITTGPVLIYPMNRSKWDKRMSASIPEEDIFYTVGFLHSSGFDNWKAFDAQNKEILKFCNDAGIKVKQYLPHYSTQEDWTKHFGPNKWRTFLERKLQFDPRMILSPGQRIFNKD* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1880 542 PANTHER GULONOLACTONE OXIDASE 18 540 - -
Ahy3g1880 542 SUPERFAMILY FAD-binding/transporter-associated domain-like 44 251 IPR036318 GO:0050660
Ahy3g1880 542 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 71 106 IPR006093 GO:0016491
Ahy3g1880 542 SUPERFAMILY FAD-linked oxidases, C-terminal domain 252 540 IPR016164 GO:0003824|GO:0050660
Ahy3g1880 542 Gene3D - 52 539 IPR016167 -
Ahy3g1880 542 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 252 539 IPR015345 GO:0009690|GO:0019139|GO:0050660
Ahy3g1880 542 Gene3D - 122 253 IPR016169 -
Ahy3g1880 542 ProSiteProfiles PCMH-type FAD-binding domain profile. 67 251 IPR016166 GO:0071949
Ahy3g1880 542 PANTHER CYTOKININ DEHYDROGENASE 3 18 540 - -
Ahy3g1880 542 Pfam FAD binding domain 71 220 IPR006094 GO:0050660
Ahy3g1880 542 Gene3D - 254 497 IPR016170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1880 Ahy-Chr3 41283507 41288285 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1880 K00279 - gmx:100804431 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2190 13 43009084 43014008 Ahy3g1880 3 41283507 41288285 hybridization
Ahy11g3117 11 148817802 148822223 Ahy3g1880 3 41283507 41288285 PCT
Ahy1g1843 1 94939024 94944222 Ahy3g1880 3 41283507 41288285 PCT
Ahy3g1880 3 41283507 41288285 Ahy11g3117 11 148817802 148822223 PCT
Ahy3g1880 3 41283507 41288285 Ahy1g1843 1 94939024 94944222 PCT