Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy3g1878 | ATGGTATTTGAAACAGCTTCTTCTTTCATTGCCAGCTGGCTCACACCCACTTGTCTCTTCGTCTTCGTCAACCTTGTCATCGGTACCATAGCCATCGTTTCTCGTTTCGCCACCCATCATCAACGGCAGCAAGTTGACTCTTCGGGTCAACTCGTCCGTTCTACTTCTCTTCTGGACCGCGTCATGTCCTTCAACCTCTATTCCTATAAAGATGATGGACATAACTCAGTTCAGGAGAATCACGAGTTGGCCCAACAAAGTCTGGGTCAATCTGTGTTAGACCAAGTCAACTCCTCCGAAAGAATGGATGACTCAGCTCAATATGAGTTGACCCGGACTCCATCTTTGTTGGAAAGATTAAAGTCAATAAAATTCTACAAATCAGAATCAACAAAGAAAGTTAAAGAGGAAGAACCTGAATTCGGATCCGGACACCAACCCAGTGCTACAAAGGACGGGTTGGATCGGGTGAATTCGGATGAGGATAGAAGAATAAGGAACTTATTATCGAGAAGGTGGGAGGGAGAGGAGTTATTGGGAGAAGAAGTAGACAAGAAAGCTGATGATTTCATCAACAGGTTTAAGCAGCAGCTTAGGCTTCAGAGGCTTGATTCAATACTACGTTATAGAGAGCTGCTCAAGAGAAATTAA | 651 | 0.4409 | MVFETASSFIASWLTPTCLFVFVNLVIGTIAIVSRFATHHQRQQVDSSGQLVRSTSLLDRVMSFNLYSYKDDGHNSVQENHELAQQSLGQSVLDQVNSSERMDDSAQYELTRTPSLLERLKSIKFYKSESTKKVKEEEPEFGSGHQPSATKDGLDRVNSDEDRRIRNLLSRRWEGEELLGEEVDKKADDFINRFKQQLRLQRLDSILRYRELLKRN* | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy3g1878 | 216 | PANTHER | COTTON FIBER (DUF761) | 7 | 82 | - | - | |
| Ahy3g1878 | 216 | PANTHER | COTTON FIBER (DUF761) | 162 | 215 | - | - | |
| Ahy3g1878 | 216 | Pfam | Domain of unknown function (DUF4408) | 8 | 36 | IPR025520 | - | |
| Ahy3g1878 | 216 | Pfam | Cotton fibre expressed protein | 181 | 215 | IPR008480 | - | |
| Ahy3g1878 | 216 | MobiDBLite | consensus disorder prediction | 134 | 158 | - | - | |
| Ahy3g1878 | 216 | PANTHER | DUF4408 DOMAIN PROTEIN | 7 | 82 | - | - | |
| Ahy3g1878 | 216 | PANTHER | DUF4408 DOMAIN PROTEIN | 162 | 215 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy3g1878 | Ahy-Chr3 | 41027237 | 41028395 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy3g1878 | - | - | adu:107479034 | 400.979 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Ahy13g2187 | 13 | 42854489 | 42855605 | Ahy3g1878 | 3 | 41027237 | 41028395 | hybridization | |
| Ahy11g3114 | 11 | 148777024 | 148777836 | Ahy3g1878 | 3 | 41027237 | 41028395 | PCT | |
| Ahy1g1846 | 1 | 95068450 | 95069639 | Ahy3g1878 | 3 | 41027237 | 41028395 | PCT | |
| Ahy3g1878 | 3 | 41027237 | 41028395 | Ahy11g3114 | 11 | 148777024 | 148777836 | PCT | |
| Ahy3g1878 | 3 | 41027237 | 41028395 | Ahy1g1846 | 1 | 95068450 | 95069639 | PCT |