Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2187 ATGGTATTTGAAACAGCTTCTTCTTTCATTGCCAGCTGGCTCACACCCACTTGTCTCTTCGTCTTCGTCAACCTTGTCATCGGTACCATAGCCATCGTTTCTCGTTTCGCCACCCATCATCAACGGCAGCGAGTTGACTCTTTGGGTCAACTCGTCCGTTCTACTTCTCTTCTGGACCGCGTCATGTCCTTCAACCTCTATTCCTATAAAGATGATGGACATGATTCAGTTCAGGAGAATCACGATTTGGTCCAACAAAGTCCGGATCAATCTGTGTTAGACCAAGTCAACTCCTCCCAAAGAATGGATGACTCAGCTCAACATGAACTGACCCGGACTCCATCTTTGTTAGAAAGATTAAAGTCAATGAAATTTTACAAATCAGAGTCAACAAAGAATGTTAAAGAGGAAGAACCTGAATTCGGATCCGGACACCAACCCAATGCTACAAAGGACGGGTTGGGTCGGGTGAATTCGGATGAGGATAGAAGAATAAGGAACTTATTATTGAGAAGGTGGGAGGGAGATGAGTTATTGGGAGAAGAAGTGGACAAGAAAGCTGATGATTTCATCAACAGGTTTAAGCAGCAGCTTAGGCTTCAGAGGCTTGATTCAATACTACGTTATAGAGAGGTGCTCAAGAGAAATTAA 651 0.4378 MVFETASSFIASWLTPTCLFVFVNLVIGTIAIVSRFATHHQRQRVDSLGQLVRSTSLLDRVMSFNLYSYKDDGHDSVQENHDLVQQSPDQSVLDQVNSSQRMDDSAQHELTRTPSLLERLKSMKFYKSESTKNVKEEEPEFGSGHQPNATKDGLGRVNSDEDRRIRNLLLRRWEGDELLGEEVDKKADDFINRFKQQLRLQRLDSILRYREVLKRN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2187 216 Pfam Cotton fibre expressed protein 181 215 IPR008480 -
Ahy13g2187 216 MobiDBLite consensus disorder prediction 86 112 - -
Ahy13g2187 216 MobiDBLite consensus disorder prediction 86 113 - -
Ahy13g2187 216 PANTHER COTTON FIBER (DUF761) 180 215 - -
Ahy13g2187 216 PANTHER COTTON FIBER (DUF761) 7 80 - -
Ahy13g2187 216 MobiDBLite consensus disorder prediction 128 142 - -
Ahy13g2187 216 MobiDBLite consensus disorder prediction 128 158 - -
Ahy13g2187 216 PANTHER DUF4408 DOMAIN PROTEIN 180 215 - -
Ahy13g2187 216 PANTHER DUF4408 DOMAIN PROTEIN 7 80 - -
Ahy13g2187 216 Pfam Domain of unknown function (DUF4408) 8 36 IPR025520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2187 Ahy-Chr13 42854489 42855605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2187 - - adu:107479034 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2187 13 42854489 42855605 Ahy3g1878 3 41027237 41028395 hybridization
Ahy11g3114 11 148777024 148777836 Ahy13g2187 13 42854489 42855605 PCT
Ahy1g1846 1 95068450 95069639 Ahy13g2187 13 42854489 42855605 PCT
Ahy13g2187 13 42854489 42855605 Ahy11g3114 11 148777024 148777836 PCT
Ahy13g2187 13 42854489 42855605 Ahy1g1846 1 95068450 95069639 PCT