Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1842 ATGCGCTCAGGAGGTTGTACATTGCAACAGACGCTCACAGCGGAGGCGGCTTCAGTGGTGAAGCACGCGCTGGTGTTGGCGCGTAGGAGAGGCCATGCACAGGTGACCCCTCTCCACGTGGCCGCCACTTTGCTGTCTCTGAGAGCCAGCTCTCTCCGCCGAGCATGCCTCAGATCTCAATTTCCCAACCACCAGCAACACCCTCTTCAGTGCAGGGCGCTTGAGCTTTGCTTCAATGTCGCTCTCAATAGACTCCCTACCACAACGCCAACGCCGCCTAACTTTCTCACCGTTAATCCCTCTCTTTCCAATGCTCTCATTGCTGCGCTTAAACGAGCCCAGGCTCACCAGCGTCGCGGCTGCATTGAGCAGCACCAACAGCAGCCTCTTCTTGCTATCAAAGTTGAGCTTGAACACCTTATTATTTCCATTCTTGATGATCCTTCTGTTAGTCGGGTCATGAGAGAAGCTGGATTTTCCAGCACCGCTGTTAAGACTAATATTGAAGATTCTTCTTCTTCTTCTTCTCCAACTTCTCATTCCTCTTCTGCTGCTGGACCTTGTTCTGTTTTCTACGCCAACAACACCAACACTTTCAGCACTCTCAGGCACCATCATTTCTTGGGTGGTAATTCTTCTGAGTACCTTCCATCTTCAGCAATGCTGTTTTCCCCTCAGCACAAGTCTTGCAACAAGGAAGACATGATGGCGGTTCTTAATGCGCTGTTAAGCAAGAAGAGGAACACTGTGATAGTTGGCGACTCTTTGTCGATAAGCGAAGCAGTGATGGCGGAACTGATGGTGAAGCTTGAAAGAGGCCATGTACCTGATGAGCTGAAGAACACAGAGTTGATCAAGTTCCAATTCTCAGGGCAGATGAAAAGGGAGGAAGTGGAAATGAAGGTCGCAGCACTGAAGAGAAAAGTAGAAGGAGGAGGTGCCATTTTCTATGTTGGGGACTTGAAGTGGACGGTGGAAGGTGAAGGAGGAGGAGAAGTTGAACATGTAGTACAAGAGATTGGGAAGTTGTTTAATGAAAAGAATAGTAATAATAAGAAGGTGTGGCTAATGGGAACAGCGAGTTACCAAACATATATAAAGTGTCAAAGAAGGGAGCCACCTCTTGAGAACCACTGGGCTCTTCAGCCTGTTCCTGTTCCATCATCAGCTCGACTTGCCTTGACTCTCCATGCTACTTCCAGTGTGTATAATTCGAAGATGAGCATGCCCCACAACTCTTCTCACATGTTTGACATAATGCACTTGAGTAACAAGAAGGAGGACGAAGAGGAAGAAAAACTGAATTGTTGTGAAGAATGTGCGTCCAATTATGAAAAAGAACTTGGGTTGTTCAAGCCAGGACACAAGAAACTCTTACCTTCTTGGCTTCAGATACATACCACCGAGGCCCATCCAAAGGATGAATTGGGAGAGCTGAAGAGAAAATGGAACAGACTTTGTAACTGTCTCCACCATAGCAAACAACTTGGGCAATATGGTAACAATAACAATGCAAAGATCTATCCTTACAATTCGTCATACCCATGGTGGCCAAATCAAAACACTCTCTTCCCAGATTCAAATTCAACTTCCATATCTTTTGCTGATCCTGTTCTGCCTCATCATCATCATCATAACTCCAACAACAACCACCACCACCACCACCACCTGGTGCCGCGGTTCCGGCGCCAACAATCATGCTCTACCATTGAGTTCAATTTCACCGAGGTCACTCAGAAAAAACAAGAATCAATAACAAGATCAGCCACCTTGGACAATCAAGAAGTAAATATTTCTCTGGCTCTTGGAAATTCAACTTTCAGAGATGATGATGGTTCGGGCCAAACACTGGTACTTCAAAGTAGAGCTCATATTTGTAAAGTGTTGCAGGAAAATGTCCCATGGCAATCTGAAACACTTCCTTCAATAGCAGAGGCCTTAGTTGAACTTGATTCAGGAATAACAACAAAGAAACAATGGTTTCTTTTGCAGGGGAATGACTTTGTTGGCAAAACAAGGTTGGCGCGTGCCATCGCTGAATCCGTGTTTGGATTCGGCCTTGTGGATAATCATGATGATGTTTTCCTTCACTTGGATATGAAGAAAGTGGGGCATTCTTCTGTTACCATATTTCCTGAAGTTCTTGCTACATCACTGAGAACCAAAGAGAAGCTTGTTGTTTTAATTGAAGATTTCGATTTGGCCGATTCCCGGTTCAAGAAGTTTGTTGGTGATGAGTTTGAGGCATCAAAGTTTGGGAATTTAAGCAAAAAAGACGAGAATCTAAAGCAAGCTATATTCATTTTGACTTCGGGTGAGGTCGACGGCGATGAGGTGATCAAGAACAAGGACAAGGACTCATCGGTGATGAATTTGGTGTTCAAGATTGAAACCAAGGCTAGCACCATGGATTTTTCATCTTCATCATTGGCAGCTGATTGTTACTTGGGCCACAAGAAAAGAAGGGCTCATGAACTAGACTTGTTTGGAAAGATTAACAAGAGTCCAAGAATTGAAGAGAATGAAGAGAACTTGTTGCTTCAGGGACAAGTAAACAAGAAGAAAGACTTTTCAAGACAATCGAGTTCCAATACCCTTGATCTTAACATGAAAGCAGATGAAGAAGACTACGATGATGGAGAAGAAGATGAGAGTAGCCCAATTTCAAGTGATTTAACCAGAGATACAATGGCTGAACACATGAACTCAAATGGGTTCCTTGAATCAATTGAGAACAGGTTTGAGTTCAACCAAAGTCCAGCTAGATTGAAAGAGAAAGAGGAACTTTTTTTGAACAAGATCAAAGAGTCTTTTGATGAGGTTTTTGAGAAGAAGAAGATGGTGAAGTTCAATGTAGATGAAAAGGTGATAGAGGAAATTGGTGTTGGGTGTGGTAATTTTACTAACAGCGTGTTTGAGAAATGGCTGAAAGACATTTTTCAAAACAAGTTATTAGAGACAGTTATTAACTGTGATCATGGGAAGGAGGGTATAGTTTTTAATATTACACTTTGTTTGGGGGTGGTAATGGTAAAGGATATAATAGTAAATTTGATAATAGTAGTGGGGGTGGTGGCGGGTTCATGA 3087 0.4351 MRSGGCTLQQTLTAEAASVVKHALVLARRRGHAQVTPLHVAATLLSLRASSLRRACLRSQFPNHQQHPLQCRALELCFNVALNRLPTTTPTPPNFLTVNPSLSNALIAALKRAQAHQRRGCIEQHQQQPLLAIKVELEHLIISILDDPSVSRVMREAGFSSTAVKTNIEDSSSSSSPTSHSSSAAGPCSVFYANNTNTFSTLRHHHFLGGNSSEYLPSSAMLFSPQHKSCNKEDMMAVLNALLSKKRNTVIVGDSLSISEAVMAELMVKLERGHVPDELKNTELIKFQFSGQMKREEVEMKVAALKRKVEGGGAIFYVGDLKWTVEGEGGGEVEHVVQEIGKLFNEKNSNNKKVWLMGTASYQTYIKCQRREPPLENHWALQPVPVPSSARLALTLHATSSVYNSKMSMPHNSSHMFDIMHLSNKKEDEEEEKLNCCEECASNYEKELGLFKPGHKKLLPSWLQIHTTEAHPKDELGELKRKWNRLCNCLHHSKQLGQYGNNNNAKIYPYNSSYPWWPNQNTLFPDSNSTSISFADPVLPHHHHHNSNNNHHHHHHLVPRFRRQQSCSTIEFNFTEVTQKKQESITRSATLDNQEVNISLALGNSTFRDDDGSGQTLVLQSRAHICKVLQENVPWQSETLPSIAEALVELDSGITTKKQWFLLQGNDFVGKTRLARAIAESVFGFGLVDNHDDVFLHLDMKKVGHSSVTIFPEVLATSLRTKEKLVVLIEDFDLADSRFKKFVGDEFEASKFGNLSKKDENLKQAIFILTSGEVDGDEVIKNKDKDSSVMNLVFKIETKASTMDFSSSSLAADCYLGHKKRRAHELDLFGKINKSPRIEENEENLLLQGQVNKKKDFSRQSSSNTLDLNMKADEEDYDDGEEDESSPISSDLTRDTMAEHMNSNGFLESIENRFEFNQSPARLKEKEELFLNKIKESFDEVFEKKKMVKFNVDEKVIEEIGVGCGNFTNSVFEKWLKDIFQNKLLETVINCDHGKEGIVFNITLCLGVVMVKDIIVNLIIVVGVVAGS* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1842 1028 Coils Coil 427 447 - -
Ahy3g1842 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 773 IPR027417 -
Ahy3g1842 1028 PANTHER PROTEIN SMAX1-LIKE 5 1 1006 - -
Ahy3g1842 1028 Pfam Clp amino terminal domain, pathogenicity island component 24 46 IPR004176 -
Ahy3g1842 1028 Pfam Clp amino terminal domain, pathogenicity island component 135 171 IPR004176 -
Ahy3g1842 1028 MobiDBLite consensus disorder prediction 854 891 - -
Ahy3g1842 1028 MobiDBLite consensus disorder prediction 854 868 - -
Ahy3g1842 1028 MobiDBLite consensus disorder prediction 872 886 - -
Ahy3g1842 1028 Gene3D - 9 174 IPR036628 -
Ahy3g1842 1028 Gene3D - 615 819 IPR027417 -
Ahy3g1842 1028 ProSiteProfiles Clp repeat (R) domain profile. 8 174 IPR004176 -
Ahy3g1842 1028 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Ahy3g1842 1028 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1842 Ahy-Chr3 38192872 38197267 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1842 - - aip:107630350 1877.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2139 13 40259422 40263880 Ahy3g1842 3 38192872 38197267 hybridization
Ahy11g3085 11 148503105 148507752 Ahy3g1842 3 38192872 38197267 PCT
Ahy1g1886 1 95450203 95454283 Ahy3g1842 3 38192872 38197267 PCT
Ahy3g1842 3 38192872 38197267 Ahy11g3085 11 148503105 148507752 PCT
Ahy3g1842 3 38192872 38197267 Ahy1g1886 1 95450203 95454283 PCT