Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2139 ATGCGCTCAGGAGGTTGTACATTGCAACAGACGCTCACAGCGGAGGCGGCTTCAGTGGTGAAGCACGCGCTGGTGTTGGCGCGTAGGAGAGGCCATGCACAGGTGACCCCTCTCCACGTGGCCGCCACTTTGCTGTCTCTGAGAGCCAGCTCTCTCCGCCGAGCATGCCTCAGATCTCAATTTCCCAACCACCAGCAACACCCTCTTCAGTGCAGGGCGCTTGAGCTTTGCTTCAATGTCGCTCTCAATAGACTCCCTACCACAACGCCAACGCCGCCTAACTTTCTCAGCGTTAATCCCTCTCTTTCCAATGCTCTCATTGCTGCGCTTAAACGAGCCCAGGCTCACCAGCGACGTGGCTGCATTGAGCAGCACCAACAGCAGCCTCTTCTTGCTATCAAAGTTGAGCTTGAACACCTTATTATTTCCATTCTTGATGATCCTTCTGTTAGTCGGGTCATGAGAGAAGCTGGATTTTCCAGCACCGCTGTTAAGACTAATATTGAAGATTCTTCTTCTTCTTCTTCTCCAACTTCTCATTCCTCTTCTGCTGCTGGACCTTGTTCTGTTTTCTACTCCAACAACACCAACACTTTCAGCACTCTCAGGCAGACCCTCAAGCACCAGCACCATCATTTCTTGGGTGGTAATTCTTCTGAGTACCTTCCATCTTCAGCAATGCTGTTTTCCCCTCAGCACAAGTCTTGCAACAAGGAAGACATGATGGCGGTTCTTAATGCGCTGTTAAGCAAGAAGAGGAACACTGTGATAGTTGGCGACTCTTTGTCGATAAGCGAGGCAGTGATGGCGGAACTGATGGTGAAGCTTGAAAGAGGCCATGTACCTGATGAGCTGAAGAACACAGAGTTGATCAAGTTCCAATTCTCAGGGCAGATGAAAAGGGAGGAAGTGGAAATGAAGCTCGCAGCACTGAAGAGAAAAGTAGAAGGAGGAGGTGCCATTTTCTATGTTGGGGACTTGAAGTGGACGGTGGAAGGTGAAGGAGGAGGAGAAGTTGAACATGTAGTACAAGAGATTGGGAAGTTGTTTAATGAAAAGAATAGTAATAATAAGAAGGTGTGGCTAATGGGAACAGCGAGTTACCAAACATATATAAAGTGTCAAAGAAGGGAGCCACCTCTTGAGAACCACTGGGCTCTTCAGCCTGTTCCTGTTCCATCATCAGCTCGACTTGCCTTGACTCTCCATGCTACTTCCAGTGTGTATGATTCGAAGATGAGCATGCCCCACAACTCTTCTCACATGTTTGACATAATGCACTTGAGTAACAAGAAGGAGGACGACGAGGAAGAAAAACTGAATTGTTGTGAAGAATGTGCGTCCAATTATGAAAAAGAACTTGGGTTGTTCAAGCCAGGACACAAGAAACTCTTGCCTTCTTGGCTTCAGACACATACCACCGAATCCTATCAGAAGGATGAATTGGGAGAGCTGAAGAGAAAATGGAACAGACTTTGCAACTGTCTCCACCATAGCAAACAACTTGGGCAATATGGTAACAATAACAATGCAAAGATCTATCCTTACAATTCGTCATACCCATGGTGGCCAAATCAAAACACTCTCTTCCCAGATTCAAATTCAACTTCCATATCTTTTGCTGATCCTGTTCTGCCTCATCATCATCATCATAACTCCAACAACAACCACCACCACCACCACCTGGTGCCGCGGTTCCGGCGCCAACAATCATGCTCTACCATTGAGTTCAATTTCACCGAGGTCACTCAGAAAAAACAAGAATCAATAACAAGATCAGCCACCTTGGACAATCAAGAAGTAAATATTTCTCTGGCTCTTGGAAATTCAAATTTCAGAGATGATGATGGTTCGGGCCAAACACTGGTACTTCAAAGTAGAGCTCATATTTGTAAAGTGTTGCAGGAAAATGTTCCATGGCAATCTGAAACACTTCCTTCAATAGCAGAGGCCTTGGTTGAACTTGATTCAGGAATAACAACAAAGAAACAATGGTTTCTTTTGCAGGGGAATGACTTTGTTGGCAAAACAAGGTTGGCGCGTGCCATCGCTGAATCCGTGTTTGGATTCGGCCTTGTGGATAATCATGATGATGTTTTCCTTCACTTGGATATGAAGAAAGTGGGGCATTCTTCTGTTACCATATTTCCTGAAGTTCTTGCTACATCACTGAGAACCAAAGAGAAGGTTGTTGTTTTAATTGAAGATTTCGATTTGGCCGATTCCCGGTTCAAGAAGTTTGTTGGTGATGAGTTTGAGGCATCAAAGTTTGGGAATTTAAGCAAAAAAGACGAGAATCTAAAGCAAGCTATATTCATTTTGACTTCGGGTGGGGTCGACGGCGATGAGGTGATCAAGAACAAGGACAAGGACTCATCGGTGATGAATTTGGTGTTCAAGATTGAAACCAAGGCTAGCACCATGGATTTTTCATCTTCATCATTGGCAGCTGATTGTTACTTGGGCCACAAGAAAAGAAGGGCTCATGAACTAGACTTGTTTGGAAAGATTAACAAGAGTCCAAGAATTGAAGAGAATGAAGAGAACTTGTTGCTTCAGGGACAAGTAAACAAGAAGAAAGACTTTTCAAGACAATCGAGTTCCAATACCCTTGATCTTAACATGAAAGCAGATGAAGAAGACTACCATGATGGAGAAGAAGATGAGAGTAGCCCAATTTCAAGTGATTTAACCAGGGATACAATGGCTGAACACATGAACTCAAATGGGTTCCTTGAATCAATTGAGAACAGGTTTGAGTTCAACCAAAGTCCAGCTAGATTGAAAGAAAAAGAGGAATTTTTTTTGAACAAGATCAAAGAGTCTTTTGATGAGGTTTTTGAGAAGAAGATGGTGAAGTTCAATGTAGATGAAAAGGTGATAGAGGAAATTGGTGTTGGGTGTGGTAATTTTACTAACAGCGTGTTTGAGAAATGGCTGAAAGACATTTTTCAAAACAAGTTATTAGAGACAGTTATTAACTGTGATCATGGGAAGGAGGGTATAGTTTTTAATATTACACTTTGTTTGGGGGGTGGTAATGGTAAAGGATATAATAGTAAATTTGATAATAGTAGTGGGGGTGGTGGCGGGTTCATGAATTCATGTTTGCCCAAGAATATCCAAATTAACTACTTCATGGATTGA 3147 0.4344 MRSGGCTLQQTLTAEAASVVKHALVLARRRGHAQVTPLHVAATLLSLRASSLRRACLRSQFPNHQQHPLQCRALELCFNVALNRLPTTTPTPPNFLSVNPSLSNALIAALKRAQAHQRRGCIEQHQQQPLLAIKVELEHLIISILDDPSVSRVMREAGFSSTAVKTNIEDSSSSSSPTSHSSSAAGPCSVFYSNNTNTFSTLRQTLKHQHHHFLGGNSSEYLPSSAMLFSPQHKSCNKEDMMAVLNALLSKKRNTVIVGDSLSISEAVMAELMVKLERGHVPDELKNTELIKFQFSGQMKREEVEMKLAALKRKVEGGGAIFYVGDLKWTVEGEGGGEVEHVVQEIGKLFNEKNSNNKKVWLMGTASYQTYIKCQRREPPLENHWALQPVPVPSSARLALTLHATSSVYDSKMSMPHNSSHMFDIMHLSNKKEDDEEEKLNCCEECASNYEKELGLFKPGHKKLLPSWLQTHTTESYQKDELGELKRKWNRLCNCLHHSKQLGQYGNNNNAKIYPYNSSYPWWPNQNTLFPDSNSTSISFADPVLPHHHHHNSNNNHHHHHLVPRFRRQQSCSTIEFNFTEVTQKKQESITRSATLDNQEVNISLALGNSNFRDDDGSGQTLVLQSRAHICKVLQENVPWQSETLPSIAEALVELDSGITTKKQWFLLQGNDFVGKTRLARAIAESVFGFGLVDNHDDVFLHLDMKKVGHSSVTIFPEVLATSLRTKEKVVVLIEDFDLADSRFKKFVGDEFEASKFGNLSKKDENLKQAIFILTSGGVDGDEVIKNKDKDSSVMNLVFKIETKASTMDFSSSSLAADCYLGHKKRRAHELDLFGKINKSPRIEENEENLLLQGQVNKKKDFSRQSSSNTLDLNMKADEEDYHDGEEDESSPISSDLTRDTMAEHMNSNGFLESIENRFEFNQSPARLKEKEEFFLNKIKESFDEVFEKKMVKFNVDEKVIEEIGVGCGNFTNSVFEKWLKDIFQNKLLETVINCDHGKEGIVFNITLCLGGGNGKGYNSKFDNSSGGGGGFMNSCLPKNIQINYFMD* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2139 1048 MobiDBLite consensus disorder prediction 859 873 - -
Ahy13g2139 1048 MobiDBLite consensus disorder prediction 859 895 - -
Ahy13g2139 1048 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Ahy13g2139 1048 Gene3D - 620 821 IPR027417 -
Ahy13g2139 1048 PANTHER PROTEIN SMAX1-LIKE 5 1 1011 - -
Ahy13g2139 1048 Pfam Clp amino terminal domain, pathogenicity island component 135 171 IPR004176 -
Ahy13g2139 1048 Pfam Clp amino terminal domain, pathogenicity island component 24 46 IPR004176 -
Ahy13g2139 1048 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1011 - -
Ahy13g2139 1048 MobiDBLite consensus disorder prediction 166 185 - -
Ahy13g2139 1048 Gene3D - 9 174 IPR036628 -
Ahy13g2139 1048 ProSiteProfiles Clp repeat (R) domain profile. 8 174 IPR004176 -
Ahy13g2139 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 778 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2139 Ahy-Chr13 40259422 40263880 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2139 - - aip:107630350 1995.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2139 13 40259422 40263880 Ahy13g2139 13 40259422 40263880 ECH
Ahy13g2139 13 40259422 40263880 Ahy3g1842 3 38192872 38197267 hybridization
Ahy11g3085 11 148503105 148507752 Ahy13g2139 13 40259422 40263880 PCT
Ahy1g1886 1 95450203 95454283 Ahy13g2139 13 40259422 40263880 PCT
Ahy13g2139 13 40259422 40263880 Ahy11g3085 11 148503105 148507752 PCT
Ahy13g2139 13 40259422 40263880 Ahy1g1886 1 95450203 95454283 PCT