Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2125 ATGTGGAACTTTGCTTCAAACTGTATTGCTGGAAGTGTGCGGCAGAAAAATGATTCCACAAAGCCAACTCATTCTGCATCGGAATGTTCTGATGATGAGAATTCGGTTGTTGGGAGAGAAGAAGGGCTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTTGAAAATGTGCCCTATGTATTGTGGTGTGGGCACACCCTTTGTAAAAATTGTATCCTGGGACTGCAATGGGCCGTTGTGAAGTTCCCAACGCTGCCAATTCAACTTCCTCTCTTTATCTCCTGCCCGTGGTGCAACCTTCTATCTTTCCGTCTGGTTTATCAAGGGAATATTAAATTCCCTCGCAAGAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGGGAAATCGCACTCAAATTGTGGTGGTGATAATCAACAACATTGGCCAATTAAAGACAATTTAACCATGGGAAGCTATGTAAGCCATGGAAATGCCCGGAGGAGCCAAGTTCACCACCCAGAGACATCTGGTTCTGGCCCTTATCATGGCAATACCGGCGACTATCTCAGTATGGAAAGGCTGCATGCTTCTCTTCGGAAGTCGCTGGTTTTTGTTGTCCAATTGACAGCTAAGTTCCCATTGGTCATTATATTTCTTTTGATCATCTTATATGCGATACCAGCTAGTGCTGCCATCTTGGCTCTGTATATACTAGTTACGATTCTCTTTGCTCTCCCGTCATTTCTCATCTTATACTTCTCATATCCTAGTTTGGATTGGCTTATCAGAGAAATTGTCACTTGA 801 0.4332 MWNFASNCIAGSVRQKNDSTKPTHSASECSDDENSVVGREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYQGNIKFPRKNYFLLWMVESMNGDRGKSHSNCGGDNQQHWPIKDNLTMGSYVSHGNARRSQVHHPETSGSGPYHGNTGDYLSMERLHASLRKSLVFVVQLTAKFPLVIIFLLIILYAIPASAAILALYILVTILFALPSFLILYFSYPSLDWLIREIVT* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2125 266 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Ahy10g2125 266 SUPERFAMILY RING/U-box 40 103 - -
Ahy10g2125 266 PANTHER UBIQUITIN-PROTEIN LIGASE 1 266 - -
Ahy10g2125 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 137 IPR013083 -
Ahy10g2125 266 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Ahy10g2125 266 Pfam RING-type zinc-finger 45 78 IPR027370 -
Ahy10g2125 266 PANTHER OS03G0211100 PROTEIN 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2125 Ahy-Chr10 109514930 109518392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2125 1 266 Miscellaneous Gene Families AT3G29270 63.469 3.20e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2125 - - gmx:100809368 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2616 20 135383708 135387232 Ahy10g2125 10 109514930 109518392 hybridization
Ahy10g2125 10 109514930 109518392 Ahy14g2933 14 138092469 138094954 PCT
Ahy10g2125 10 109514930 109518392 Ahy4g2591 4 123857276 123859766 PCT
Ahy14g2933 14 138092469 138094954 Ahy10g2125 10 109514930 109518392 PCT
Ahy4g2591 4 123857276 123859766 Ahy10g2125 10 109514930 109518392 PCT