Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g2933 ATGTGGAACTTTGCTTCGAATTGCATTGTTGGGAGTGTGGGTCAGAGAAACGAGTGTGCAAGGCCATCTCACGCTACTTCAGAATGTTCCGACGATGAGACTTCTATTGTGAGCAGAGAAGAAGGACTGGAATGTCCAATATGCTGGGAATCTTTTAACATTGTCGAAAATGTGCCTTATGTTTTGTGGTGCGGTCACACCCTATGTAAAAATTGCATCCTGGGACTGCAATGGGCTGTGGTTAAATTTCCAACACTTCCAATTCAGCTTCCACTTTTTATCTCCTGCCCATGGTGCAACCTTCTATCTTTCCGTTTAGTTTATCGGGGAAATCTGAGATTCCCTCACAAGAACTACTTTCTTCTTTGGATGGTTGAGAGTATGAATGGTGATAGAGTGAAGACCCATTCAACTTCATATGGGGATCATCATCATCATCATCATCATCCAGTGTTTCCAAATAGGGACAATTTTGCTACAGGAAGCCAATTAAACCATGGCAACACTAGGAGGGGACAAGTTCTCCATCCAGAGTCATTGAGTTCCAATCGGTTTCATCACAATACTGGTAACTACCTCAGTATGGAAAGACTGCATACATCTATTCGCAAGTCCCTGGTTTTATTTGTTCACTTGACAGCAAAGTTCCCCTTGATCATCGTATTTCTTTTGATTGTCTTATATGCAATACCGGCCAGTGCAGCCATTTTGGCTCTGTATATACTTATTACCATTGTGTTTGCTCTCCCATCATTTCTCATCTTGTACTTTGCATATCCTAGTTTGGATTGGCTTATCAGGGAAATTATCACTTGA 816 0.4167 MWNFASNCIVGSVGQRNECARPSHATSECSDDETSIVSREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYRGNLRFPHKNYFLLWMVESMNGDRVKTHSTSYGDHHHHHHHPVFPNRDNFATGSQLNHGNTRRGQVLHPESLSSNRFHHNTGNYLSMERLHTSIRKSLVLFVHLTAKFPLIIVFLLIVLYAIPASAAILALYILITIVFALPSFLILYFAYPSLDWLIREIIT* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g2933 271 PANTHER UBIQUITIN-PROTEIN LIGASE 1 271 - -
Ahy14g2933 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 137 IPR013083 -
Ahy14g2933 271 PANTHER LIGASE, PUTATIVE-RELATED 1 271 - -
Ahy14g2933 271 SUPERFAMILY RING/U-box 36 101 - -
Ahy14g2933 271 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Ahy14g2933 271 Pfam RING-type zinc-finger 45 78 IPR027370 -
Ahy14g2933 271 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g2933 Ahy-Chr14 138092469 138094954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g2933 1 271 Miscellaneous Gene Families AT3G29270 61.397 1.70e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g2933 - - adu:107486675 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2933 14 138092469 138094954 Ahy4g2591 4 123857276 123859766 hybridization
Ahy20g2616 20 135383708 135387232 Ahy14g2933 14 138092469 138094954 PCT
Ahy10g2125 10 109514930 109518392 Ahy14g2933 14 138092469 138094954 PCT
Ahy14g2933 14 138092469 138094954 Ahy20g2616 20 135383708 135387232 PCT
Ahy14g2933 14 138092469 138094954 Ahy10g2125 10 109514930 109518392 PCT