Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2524 ATGATAAAGTCTGAAAGGGACACTACACTTTCCATTGACTTTATCCTTCTTTACTTCAATGTTCTTCTTTTGCTAGCTATATCCCTCTATATAGCCCATTACTATAATTATCGCTCTGAATATAACATTAGTAGGAAAATGAGCAAGTTCATAGTGATATTATATGTTGTATGTTTAGCTGCTTCTGGGTTTGTTAATGGATCTATCATCAAGAAGGAGAAAGACCAAATTAGGGTCTTTGAATTAAAGAAGGGTGACCTTACTTTGAAGGTCACCAACTGGGGTGCCACACTTATTTCCTTACTACTTCCTGACAAATACGGAAAGTTGGGAGACATTGTTCTTGGATATGACTCTCCCAAGGCATACACTAATGATACACAATATTTTGGAGCTACCGTTGGCAGGGTCGCTAACAGAATTGGAGGAGCTCAGTTTACATTAAATGGAATCCATTACAAGTTAATTGCTAATGAAGGAAACAATACACTTCATGGTGGACCTAGAGGATTTAGTGATGTGCTTTGGAAAGTGGTAAAGTATCAAAGAGATGGTGACAGACCCAAAATCAAATTCAGCTACCACAGTTTTGATGGTGAAGAAGGATTTCCGGGTGACCTATTGGTAACAGTGAGCTACATCCTAAGTGAAGAATCGAGTTTGAGCATAGTCATGAAAGCAAAAGCCTTAAACAAAGCAACACCAGTGAACCTGGTTAACCATGCATATTGGAACCTAGGAAACCACAACAGCGGCAACATCCTTAATCAAGTTGTTCAAATCTTCGGGTCCAAATTCACACCGCTCAACGACCAGCTCATTCCCTTCGGAAACTTCTCGTCCGTCAAAGGAACCCCATATGATTTCCTTAAACCACAAGTTGTTGGCTCTAGGATCGACCAATTAACCAACACCAATGGCTATAACGTAAATTATGTTCTTGATAAGAATAAGAATGACGACAACGAGGTTAAGGTTGCGGCTATTGTCACGGATAAGAGGTCAGGGAGAGTGATGAAGATTGCGACGAATCAACCAGGATTGCAATTCTACACTGCGAATTATGTGAAGAATGAGAAGGGGAAAGACGGGTTTGTGTATCAGCCACGATCGGCGTTGTGTTTGGAGACTCAAGCGTTCCCTGACTCCGTCAACCATCCCAATTTTCCGTCAACCATTGTCACGCCGGAAAAGCCTTACAACCATCTTCTGTTCTTCAAATTCTCCACCAATGCTCCACATGGTTTTTAA 1251 0.4101 MIKSERDTTLSIDFILLYFNVLLLLAISLYIAHYYNYRSEYNISRKMSKFIVILYVVCLAASGFVNGSIIKKEKDQIRVFELKKGDLTLKVTNWGATLISLLLPDKYGKLGDIVLGYDSPKAYTNDTQYFGATVGRVANRIGGAQFTLNGIHYKLIANEGNNTLHGGPRGFSDVLWKVVKYQRDGDRPKIKFSYHSFDGEEGFPGDLLVTVSYILSEESSLSIVMKAKALNKATPVNLVNHAYWNLGNHNSGNILNQVVQIFGSKFTPLNDQLIPFGNFSSVKGTPYDFLKPQVVGSRIDQLTNTNGYNVNYVLDKNKNDDNEVKVAAIVTDKRSGRVMKIATNQPGLQFYTANYVKNEKGKDGFVYQPRSALCLETQAFPDSVNHPNFPSTIVTPEKPYNHLLFFKFSTNAPHGF* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2524 416 PIRSF GALM 65 411 IPR015443 GO:0016853|GO:0019318
Ahy20g2524 416 Gene3D - 68 411 IPR014718 GO:0030246
Ahy20g2524 416 PANTHER ALDOSE-1-EPIMERASE 47 413 - -
Ahy20g2524 416 SUPERFAMILY Galactose mutarotase-like 72 409 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ahy20g2524 416 PANTHER ALDOSE 1-EPIMERASE 47 413 - -
Ahy20g2524 416 CDD galactose_mutarotase_like 83 408 - -
Ahy20g2524 416 Pfam Aldose 1-epimerase 79 402 IPR008183 GO:0005975|GO:0016853
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2524 Ahy-Chr20 133037687 133043717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2524 73 409 Miscellaneous Gene Families AT5G15140 54.896 9.88e-132 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2524 K01785 - gmx:100779602 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1879 11 122566744 122569094 Ahy20g2524 20 133037687 133043717 ECH
Ahy20g2524 20 133037687 133043717 Ahy20g2524 20 133037687 133043717 ECH
Ahy20g2524 20 133037687 133043717 Ahy10g2039 10 107903321 107907023 hybridization
Ahy20g2524 20 133037687 133043717 Ahy14g2862 14 137118398 137123772 PCT
Ahy20g2524 20 133037687 133043717 Ahy4g2513 4 122784590 122789915 PCT
Ahy14g2862 14 137118398 137123772 Ahy20g2524 20 133037687 133043717 PCT
Ahy4g2513 4 122784590 122789915 Ahy20g2524 20 133037687 133043717 PCT