Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1399 ATGCCAACCCCGGTGGCAGCAGCCCGGCAATGCCTAACACCAGAGGCTGCCCGCGCCCTCGACGAGGCGGTGTCCGTTGCCCGCCGTCGCGGCCACGCCCAAACCACCTCTCTCCACGCCATCTCCGCCCTCCTCTCCCTCCCCTCCTCCTCCCTCCTCCGCGACGCATGCTGCCGCGCCCGCAACTCCGCCTACTCGCCGCGCCTTCAGTTCAAGGCCCTCGACCTCTGCCTCTCCGTGTCCCTCGACCGCTCCCCTTCCTCCAACCCATCCACTGACCCGCCCGTCTCCAACTCCCTCATGGCAGCCATCAAGCGGTCTCAGGCCAATCAGCGCCGACACCCTGACACGTTCCATAACCAACTCTTGTTCCAAAGTAACCACTCTAACAACCTCCAACAAACTCAGCAACCGTTTTCTGTTTCGTCGGTTAAAGTTGAGCTGCAGCATTTGGTGATATCGATTCTTGATGACCCGGTTGTCAGTCGGGTTTTCGCTGAAGCGGGTTTCCGGAGCTCCGAAATTAAGCTCGCGATACTCAGGCCCTTGCCGCAGCTTTTTCGCTACTCGAGATCGCGTGGGCCGCCGGTTTTTCTATGTAACTTGCCGGAACAAGGCCGCCGGGGAGGGTTTTTCGGGTTCCCGTTTTCCGGCCGCGGAGACGGAGGGGAGGAGGAGAGTTTCAGGAGGATTGGGGAGGTTCTGGTGAGAAGCAAGGGGAGGAACCCGGTGCTGCTTGGCGCGTGTGCTGGCGAGGCGATGCGGCAGTTCGTGGAGGCGGTGGAGAAGCGGAGGGAGGGGGTGCTGCCGGTGGAGCTGGTAGGGTTGAGGATTGTGTCCGGGATTAGGGAAGCGGAGGAGGTGGCGGAGAAGGGCGTGGGGCCAGGAGTGGTGGTGAATTTGGGGGACTTGAAGGGTTTTGTGGCGGAGGAGGAGAATAACGGCGGTGAAGAGGGTGTTCTTGGGGAACTGGGGCGGTTGTTGAAGGTTCATAGTGAGAGGGTATGGTTGATTGGTTTTGCTGGGAGCTATGAGTCTTACTTAAAATTTGTTGGAAGGTTTCCTTTTGTCGAGAAAGATTGGGATTTGCAGCTTCTTCCCATTACTTCTCTTCAATCTTGCCAGAGACCAAGTTTAATGGATTCATTTGTACCATTTGGTGGATTTTTCTCTTCCCCTTCCGATTTGAAAAGTCCACTACCTGGCTGTATTCCCAATCTCAGGCACCGTCAAAACAGCGAAAGGTGTGAACAAGAAGTGCCTGCTCCAAAGGAAAGATTTTCTTCTTTGGCTGTTGAACCATGTCAATCTAACTATCAGCCATGGCTACAGATTGCAGAAATCAATGCAGCAAAAGGATTGAATACTAAGACCAAAAAGGATGATTTTCTTTTATTCGATGGTGGTAAATCCATGCCAACTCATAAGAACATGGATAATGTTTACTATCATCTGCGCCAGGGATTTTCCGAAGCAAATTCTTGTCCGAATGTTATGGGTTTTCTTTGTACTAAAGATAAAAAGAAAGATGCTGAAAATCGTGACAGCAAAGTTACAGACAATTCTCCTGTTGAAGTCATCGATCTAAACTCGGAAGTTCCAGCCAATTTGCAAATTCTGTCTACATCACTACCAACCAGTTCTTTTTCTTTGGCCTTCAAGGAAATGCAGGGGAAGCATACTTCGAAACCTATGTTCCAAAAAGCGGAAGATCTCGACTCAGCTGACCTGAGATCATGCAACATCTCCAATTCAAGTGTGTGCGATGGTAGTGAAATGTCTCCAACTTCAGTTAATTCTGTAACCACAGATCTGGGTTTAGGACTATGTTCTTCTCCTACCAGCAATAAATTTAAGAAACCTATTGACGAATATTCAATGGGTCCTCCAAAGCAAATTGGGAGTCAATTTTCTTCCAACTTCAATTTGGCTGATGGGAATATCTTGAAACATATGTCACAGTCTTCTTCCTGCTTAAGTTTCGACCATGTTAGACAAGTTGATGCTAGAAATCCCAAAAGCCTTTTTGAAGTTCTATCGAAGGAGGTAACCTGGCAAGACGAAGCATTACATGCTATCGTCAAAGCAATAGTTTGCAGTTCAACAAAAAGGATTAGACAATGTGGAGCAATTCAACGAGGTGATTTATGGATGAATTTTGTGGGACCTGATAGGCACGGCAAAAAGAAAGTAGCCGTTGCTTTAGCTGAGATTTTGTATGGAAGTCGGGACAGCTTTATTTGTATGGATCTAGGTTCCAAAGAAATGAGAGCATGCAATGCTGTTAAATTTAGGGGGAAGACTACTCTTGATTTTATTGTGGGGGAGTTTTGCAAGAAAACTTTGTCTGTGGTTTTTCTTGAAAATGTAGATAAGGCAGATGGAGTAACTCAAAGCAGTTTGTTGCAAGCCATCAGGACGGGGAAAATAACAGACTCGCACGGACGAGAAATCGGATTAAACAATGCCACATTTGTGACTTCGTTTTTAAATTATAAAGATAGTTTGACCTTAACAGAAGAACCTTCCAACTATCCTGAGGAAAGGATACTAATGGCAAAAAGAGGAGCTATCAAGATCAAAGTTGAACATGCCATTGGAGACATCATATCTAACAGATTGAGAGATGTTATGCCAAATCTAATTTTTGTAAATAAACGAAAATTGATTGGTGATAATGAATTTCACCACGATCGACATTTAATCTCAGATGTGCCTAAAAGGGCACATATAGCATCAAATTGGCTTTTGGATTTGAATCTTCCAGCTGAAGAGAGTGAATCGCAACAAATGGACATTGAAAATTCCAAACATGTCTCAACTGGGAACAACCAAAACATTTGGTTGCAAGATTTGTGTGATCAAGCTTACCAAACAGTTGTTTTCAAACCTTTCGATTTTGATGCGCTGGAAGATAGAGTGTTAAAAGTAATTAGAAGTAACTTCAACAAGATTCTTGGATCAGAATGTGTCTTACAAATTCAGTCAGAAGTCATTGACCAGTTGCTAGCAGCAGCATATGTCTTGGACCAGGATACAGTGGTGAAGTGGGTGGAGCAAGTTCTGAGCGAAGGATTCCTTGAAGTACAGAGAAGGTGCAACCCCACAGCTAGTTCAATTGTGAAACTTGCTTCATATCAAGATCAAGCTTTAAGTGTATACCTTCCACCAACAATACTTTTGGATTGA 3189 0.4613 MPTPVAAARQCLTPEAARALDEAVSVARRRGHAQTTSLHAISALLSLPSSSLLRDACCRARNSAYSPRLQFKALDLCLSVSLDRSPSSNPSTDPPVSNSLMAAIKRSQANQRRHPDTFHNQLLFQSNHSNNLQQTQQPFSVSSVKVELQHLVISILDDPVVSRVFAEAGFRSSEIKLAILRPLPQLFRYSRSRGPPVFLCNLPEQGRRGGFFGFPFSGRGDGGEEESFRRIGEVLVRSKGRNPVLLGACAGEAMRQFVEAVEKRREGVLPVELVGLRIVSGIREAEEVAEKGVGPGVVVNLGDLKGFVAEEENNGGEEGVLGELGRLLKVHSERVWLIGFAGSYESYLKFVGRFPFVEKDWDLQLLPITSLQSCQRPSLMDSFVPFGGFFSSPSDLKSPLPGCIPNLRHRQNSERCEQEVPAPKERFSSLAVEPCQSNYQPWLQIAEINAAKGLNTKTKKDDFLLFDGGKSMPTHKNMDNVYYHLRQGFSEANSCPNVMGFLCTKDKKKDAENRDSKVTDNSPVEVIDLNSEVPANLQILSTSLPTSSFSLAFKEMQGKHTSKPMFQKAEDLDSADLRSCNISNSSVCDGSEMSPTSVNSVTTDLGLGLCSSPTSNKFKKPIDEYSMGPPKQIGSQFSSNFNLADGNILKHMSQSSSCLSFDHVRQVDARNPKSLFEVLSKEVTWQDEALHAIVKAIVCSSTKRIRQCGAIQRGDLWMNFVGPDRHGKKKVAVALAEILYGSRDSFICMDLGSKEMRACNAVKFRGKTTLDFIVGEFCKKTLSVVFLENVDKADGVTQSSLLQAIRTGKITDSHGREIGLNNATFVTSFLNYKDSLTLTEEPSNYPEERILMAKRGAIKIKVEHAIGDIISNRLRDVMPNLIFVNKRKLIGDNEFHHDRHLISDVPKRAHIASNWLLDLNLPAEESESQQMDIENSKHVSTGNNQNIWLQDLCDQAYQTVVFKPFDFDALEDRVLKVIRSNFNKILGSECVLQIQSEVIDQLLAAAYVLDQDTVVKWVEQVLSEGFLEVQRRCNPTASSIVKLASYQDQALSVYLPPTILLD* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1399 1062 Gene3D - 644 880 IPR027417 -
Ahy20g1399 1062 ProSiteProfiles Clp repeat (R) domain profile. 8 185 IPR004176 -
Ahy20g1399 1062 Gene3D - 10 181 IPR036628 -
Ahy20g1399 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 1023 IPR027417 -
Ahy20g1399 1062 PANTHER PROTEIN SMAX1-LIKE 8 1 1059 - -
Ahy20g1399 1062 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1059 - -
Ahy20g1399 1062 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1399 Ahy-Chr20 32645649 32650011 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1399 - - gmx:100800606 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1496 17 28479974 28485117 Ahy20g1399 20 32645649 32650011 ECH
Ahy12g2887 12 118607175 118611854 Ahy20g1399 20 32645649 32650011 ECH
Ahy20g1399 20 32645649 32650011 Ahy20g1399 20 32645649 32650011 ECH
Ahy20g1399 20 32645649 32650011 Ahy10g1032 10 23035976 23040463 hybridization