Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2887 ATGAGAACAGGAAGTTGTTCTGTGCAACAAGGGCTAACCCCAGAAGCTGCAAGCATAGTGAAGCAGGCCGTGACGCTTGCAAAGCGTCGCGGCCATGCTCAAGTGACGCCACTTCACGTGGCGAACACTATGCTTTCAGATTCTAACGGTTTATTAAGAACAGCTTGTCTCCAGTCTCATTCGCACCCTCTTCAGTGCAAGGCGTTGGAGCTCTGCTTCAACGTTGCACTGAATAGGTTGCCGGCTTCAACCTCGAGCCCCATGTTGGGCAACCATCACCACCCCCACCACTCCCAGTGTCCTTCGATTTCAAACGCCATGGTAGCTGCTTTCAAGCGCGCACAAGCTCACCAGCGACGCGGATCCATTGAGAACCAACAACAACCGTTGTTGGCCGTGAAGATTGAGCTTGAACAACTCATAATCTCAATCTTGGATGACCCTAGTGTTAGTAGGGTTATGAAAGAAGCAGGGTTTTCTAGCACACAAGTCAAGAGCAATGTAGAACAAGCTGTTTCTCTAGAAATATGCTCTCAAAACAACAACACCAACAACAAGAATAACAACAAGCCAAAGGATCATAAAAGTGATGGAGATGACAACAACAACAACAACAAGGTAGTGTTGGATCCGGTAAGAGATGAAGATGTTTCAAGTGTGATAGATAATTTGGTGAGTCAAAGAAGAAGAACAACCGTGATTGTTGGTGAGTGTGTGAAAACTCTTGAAGGTGTAGTTAGAAGGGTGATGGAGAAGTTTGAGAAAGGACAAGTTAGTGAATCCCTTAGAGGTATCAAGTTTCTACCTCTTTCTCTTTCTTCCTTCTCAAATTTTTCAAGATTAGAGGTTGAACAAAAGATTGAAGAGCTTAATAGGAGTCTTGTTAATAACAATAACAATGATAGCAATAAAGGGTGTGTTTTGTATCTTGGAGATCTCAAATGGGTTTTTGATTATTATAGAGACCAAGGAATGAGTAGTAGGGTTTGTTATAGCCCTGTGGATCACATGATAATGGAGATTGCAAAGATGGTGAGTAGTAATAATAATAATAATAATAATGGAAGGTTTTGGTTGATGGGTATTGCAACTTTCCAAGCTTATATGAGATGCAAAAATGGACATCCATCAATGGAGAATCTTTGGGGTCTTCACCCCATTACAATCCCTGCTGGAAGCTTGAGTTTGAGCCTCATCACTGACAGTGGTCTACAAAATCAAGCAATAACAAACTCTAAAGCTGACAATAGAACTAGCTGGCTATTACTTGATCAAGAAGGAAGAGGAGGAGGAGTGAGGGGTGATATTAGTAATGATCTTGGAACCTTCTTGGAACCTTCTTCTTCTTCAGCTAAGGTAGTTGAGAACGAAGTTCGAAGCTTGCAAAGTATGAATAGTACTTGTAACAGTGATTCTTCAAGTTCTCTCCTTCCTGCATGGCTTCAACAGTACAAGAATGAGAATAAAGGACTCTCCTCTTCTAATCATCAGGATGTTCAAGTGGGAGAGGTTTCCAAAACTTGGAACAATGCAACTCAAAAACAACCCTACACTATTTGTGATCAAACTCTCACATTATCATCACCTTCTTCATCCAATACTTCTGGTGTTTTTTCCTATGATCACCACCAAAATCCTAACAATATCAACCATATTTGGAATTTAGAAAATCGTAGTAACCGCAATCACAGCCACAGCCAGAACCACAATCAGAATAATGATAAACCCGCTTTGCGAGTTTACATTAGCAACAAAGAAATTGTAGATCATAGTCCATTAACTATCTCACCATTATCAAATCCAAGTTCTTCAAACCCTAATTCCACTTCTTCAAGTGGTGTCATGGAAGCAATGGAGTATGTGAACAACAAATTCAAAGAGCTCAACTTGGAGAATCTAAAAACCCTTTGCAATGCTTTGAAGAACAAAGTTCCATGGCAGAAAGAGATACTACCCGAAATCGCGAGCACCATTTTGCAATGCCGTTCCGGAACAAGGCAAAGAAGGAAAGGAAATAACAACAACAACAATGTGATGATGAAAGAAGAAACATGGTTGTTCTTCCAAGGTGTTGATCTTGAAGCCAAAGAGAAGATAGCAATGGAATTGGCTAGGGTTGTTTTTGGTTCATCAAAGGAAAACTTCATCTCAATATCAATGAGTAGTTTTTCATCATCAACAAGAGCTGATTCATCAATTGAGGACAACAATTCTTGCAGGAACAAGAGATCAAGGGAAGATCCAAGTTGTAGTTACATTGCGCGATTCGGGGAAGCAGTTTGTTCTAACCCTCATAGGGTTTTTCTTGTTGAGGACATTGAACAAGCTGATTATTTCTCTCAACTTGGTTTCAAGAGAGCAATGGAGAGAGGAAAGGTTGAAGATTCAAATGGTGAAGAGGTTTCACTTTGTGATGCTATCATCATTTTGAGTTGTGAGAGTTTTAGTTCAAGATCAAGGGCTTGTTCTCCATTGACAAGACAAAAATCTTGTGAAGGTTCTTCGTCAAGAGAAGACAACACTAATCATAATAATAATAATGATAATGGTGATGGTGTTGCTACTTTGGAGGAGATAAGTCCTTGTGTTTCTTTGGATTTAGATTTGAATATTTCCATTGATGATGATGAATGCAATGATGATCATGATGATCATGGATCCGTGGATGAAATTGGACTTCTTGAATCTGTGGACGGAAAAGTTTTCTTCAAAATTCAGGATTTGTAA 2727 0.3997 MRTGSCSVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLSDSNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSPMLGNHHHPHHSQCPSISNAMVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMKEAGFSSTQVKSNVEQAVSLEICSQNNNTNNKNNNKPKDHKSDGDDNNNNNKVVLDPVRDEDVSSVIDNLVSQRRRTTVIVGECVKTLEGVVRRVMEKFEKGQVSESLRGIKFLPLSLSSFSNFSRLEVEQKIEELNRSLVNNNNNDSNKGCVLYLGDLKWVFDYYRDQGMSSRVCYSPVDHMIMEIAKMVSSNNNNNNNGRFWLMGIATFQAYMRCKNGHPSMENLWGLHPITIPAGSLSLSLITDSGLQNQAITNSKADNRTSWLLLDQEGRGGGVRGDISNDLGTFLEPSSSSAKVVENEVRSLQSMNSTCNSDSSSSLLPAWLQQYKNENKGLSSSNHQDVQVGEVSKTWNNATQKQPYTICDQTLTLSSPSSSNTSGVFSYDHHQNPNNINHIWNLENRSNRNHSHSQNHNQNNDKPALRVYISNKEIVDHSPLTISPLSNPSSSNPNSTSSSGVMEAMEYVNNKFKELNLENLKTLCNALKNKVPWQKEILPEIASTILQCRSGTRQRRKGNNNNNNVMMKEETWLFFQGVDLEAKEKIAMELARVVFGSSKENFISISMSSFSSSTRADSSIEDNNSCRNKRSREDPSCSYIARFGEAVCSNPHRVFLVEDIEQADYFSQLGFKRAMERGKVEDSNGEEVSLCDAIIILSCESFSSRSRACSPLTRQKSCEGSSSREDNTNHNNNNDNGDGVATLEEISPCVSLDLDLNISIDDDECNDDHDDHGSVDEIGLLESVDGKVFFKIQDL* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2887 908 ProSiteProfiles Clp repeat (R) domain profile. 8 175 IPR004176 -
Ahy12g2887 908 MobiDBLite consensus disorder prediction 179 209 - -
Ahy12g2887 908 SUPERFAMILY Double Clp-N motif 12 168 IPR036628 -
Ahy12g2887 908 PANTHER PROTEIN SMAX1-LIKE 3 1 907 - -
Ahy12g2887 908 MobiDBLite consensus disorder prediction 592 613 - -
Ahy12g2887 908 Gene3D - 201 387 IPR027417 -
Ahy12g2887 908 MobiDBLite consensus disorder prediction 827 853 - -
Ahy12g2887 908 Gene3D - 610 849 IPR027417 -
Ahy12g2887 908 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 907 - -
Ahy12g2887 908 Coils Coil 280 300 - -
Ahy12g2887 908 MobiDBLite consensus disorder prediction 726 745 - -
Ahy12g2887 908 Pfam Clp amino terminal domain, pathogenicity island component 135 172 IPR004176 -
Ahy12g2887 908 Pfam Clp amino terminal domain, pathogenicity island component 23 53 IPR004176 -
Ahy12g2887 908 Coils Coil 623 643 - -
Ahy12g2887 908 Gene3D - 9 173 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2887 Ahy-Chr12 118607175 118611854 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2887 - - adu:107476159 1562.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2887 12 118607175 118611854 Ahy17g1496 17 28479974 28485117 ECH
Ahy12g2887 12 118607175 118611854 Ahy20g1399 20 32645649 32650011 ECH
Ahy12g2887 12 118607175 118611854 Ahy12g2887 12 118607175 118611854 ECH
Ahy12g2887 12 118607175 118611854 Ahy2g2474 2 101009250 101013929 hybridization