Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0960 ATGGCCACCACCGAGAAAGAGGTGAAATTTGAGAACAAGAACAAAGAGCTGAAGCATCTTGGGTTTGTGAGGGTTGCTGCAATTCAAACCTTTGTGGTTGTCACAAATCTGTATGAATACGCAAAGCAAAACTCGGGCCCTTTGAGATCTGCCGTTGGGACGGTTGAGGGCACTGTAACTTCCGTTCTGGGCCCTGTCTACAACAAACTCAAGGATGTCCCAGATGATGTCCTCGTTTTTGTTGACAACAAGGTAGATGATGCTACTCACAAGTTCGGTGAGCATGCTCCTTCTTTTGCTAAGCAGGGTGCTTCCAAAGCAAGGAGTTTGATTCAGAGTCTTGCACATGAAGCCGGACGATTTGCAAGTGAGGTTCAATGTGGAGGGCCAAGAGCAGCTATACATTATGTAACCAGAGAGTCAAAGGATTTGGTGCTAATTAACTCAGTGAAGTTATGGAAAGGACTAAACCACTTCCCACCATTTCATGCACTGGCAGATGTGGCTGTGCCCACTGCTGCTCATTGTTCGGATAAGTATAACCACATAGTTAAGCATTTGAGTGGTAAAGGGTATCCTCTCTCTGGTTATTTGCCTTTGATTCCCGTCGATGACATTGCCAAGGCGTTCAGGCAGGGCGGTGAGGCAAGCATGAACGGAGGAGATGAAGAAGCCTGTAAGAATGGGAAGAGATCATAA 699 0.4649 MATTEKEVKFENKNKELKHLGFVRVAAIQTFVVVTNLYEYAKQNSGPLRSAVGTVEGTVTSVLGPVYNKLKDVPDDVLVFVDNKVDDATHKFGEHAPSFAKQGASKARSLIQSLAHEAGRFASEVQCGGPRAAIHYVTRESKDLVLINSVKLWKGLNHFPPFHALADVAVPTAAHCSDKYNHIVKHLSGKGYPLSGYLPLIPVDDIAKAFRQGGEASMNGGDEEACKNGKRS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0960 232 PANTHER RUBBER ELONGATION FACTOR-RELATED 2 225 - -
Ahy20g0960 232 Pfam Rubber elongation factor protein (REF) 12 212 IPR008802 -
Ahy20g0960 232 PANTHER REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940 2 225 IPR008802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0960 Ahy-Chr20 13587660 13589739 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0960 - - gmx:100816931 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0960 20 13587660 13589739 Ahy20g0960 20 13587660 13589739 ECH
Ahy20g0960 20 13587660 13589739 Ahy10g0676 10 7361020 7363182 hybridization
Ahy20g0960 20 13587660 13589739 Ahy13g4476 13 144921056 144922834 PCT
Ahy20g0960 20 13587660 13589739 Ahy3g4193 3 141912326 141914119 PCT
Ahy13g4476 13 144921056 144922834 Ahy20g0960 20 13587660 13589739 PCT
Ahy3g4193 3 141912326 141914119 Ahy20g0960 20 13587660 13589739 PCT