Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0396 ATGGGGGCGTATAGCGCTGATGAAGATTACGATTATTTGTTCAAGGTGGTGCTGATTGGGGACTCTGGTGTGGGAAAATCGAACCTTTTGTCGAGATTCACCAAGAACGAATTCAGCAATGAATCAAAATCCACCATTGGGGTTGAGTTTGCCACAAGAAGCATTAGGGTAGATGATAAGATTGTCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTATCGAGCAATTACAAGTGCATACTATCGAGGAGCCGTTGGGGCATTACTAGTGTACGATGTTACGCGCCATGTAACATTCGAGAATGTGGCGAGGTGGTTGAAGGAGCTGAGAGATCACACAGATGCAAACATTGTGGTTATGCTTGTGGGAAACAAAGCAGACCTCCGCCATCTGCGGGCGGTTTCGACCGATGACGCCACGGCCTTTGCTGAAAGAGAGAGCACATTTTTCATGGAAACATCTGCTCTGGAGGCCTTCAATGTCGAAAACGCCTTCACAGAGGTCATGAAGCAGATCTATCATGTTGTGAGCAAGAGGGCACTCGACATTGATGATGATCCAACATCTTTACCAAAAGGGCAATCAATCAATGTTGGGTCTAGAGATGATGTTTCAGCAGTCAAGAATGGTGGATGTTGCTCTTCCTGA 654 0.4664 MGAYSADEDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSNESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVARWLKELRDHTDANIVVMLVGNKADLRHLRAVSTDDATAFAERESTFFMETSALEAFNVENAFTEVMKQIYHVVSKRALDIDDDPTSLPKGQSINVGSRDDVSAVKNGGCCSS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0396 217 SMART rho_sub_3 16 177 IPR001806 GO:0003924|GO:0005525
Ahy20g0396 217 Gene3D - 6 215 IPR027417 -
Ahy20g0396 217 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 215 - -
Ahy20g0396 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Ahy20g0396 217 SMART ran_sub_2 19 214 - -
Ahy20g0396 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Ahy20g0396 217 ProSiteProfiles small GTPase Ras family profile. 3 217 IPR001806 GO:0003924|GO:0005525
Ahy20g0396 217 SMART rab_sub_5 14 177 - -
Ahy20g0396 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Ahy20g0396 217 SMART ras_sub_4 11 177 - -
Ahy20g0396 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Ahy20g0396 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Ahy20g0396 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Ahy20g0396 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Ahy20g0396 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Ahy20g0396 217 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Ahy20g0396 217 PANTHER DRAB11-RELATED 1 215 - -
Ahy20g0396 217 CDD Rab11_like 11 175 - -
Ahy20g0396 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0396 Ahy-Chr20 4044823 4046701 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0396 K07904 - gmx:100783534 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0396 20 4044823 4046701 Ahy20g0396 20 4044823 4046701 ECH
Ahy20g0396 20 4044823 4046701 Ahy13g3396 13 131309608 131311862 ECH
Ahy18g1420 18 27225932 27230071 Ahy20g0396 20 4044823 4046701 ECH
Ahy18g0948 18 12120272 12122348 Ahy20g0396 20 4044823 4046701 ECH
Ahy13g1634 13 24208460 24211539 Ahy20g0396 20 4044823 4046701 ECH
Ahy20g0396 20 4044823 4046701 Ahy10g0211 10 1926422 1928322 hybridization