Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1420 ATGGCGTCATACAATAGAGGGGACGATGACTATGACTACCTATTCAAGCTGGTTCTCATCGGTGACTCTGGCGTCGGAAAATCCAACCTCCTCTCCCGCTTCACCCGCAACGAGTTCAACCTCGAATCCAAGTCCACTATCGGCGTTGAATTCGCCACCAGAACCATCACCGTCGATGATAATAAGGTCCTCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAAAGATATCGCGCAATCACAAGTGCCTACTACCGAGGAGCTGTTGGTGCCTTACTAGTTTATGATGTCACGCGACATATTACATTTGAGAATGTTGAGAGATGGTTGAAGGAGTTGAGAGATCACACGGATGCCAACATCATAGTAATGCTCGTTGGCAATAAAGCAGACCTGCGTCACCTTCGAGCCGTGTCTACCGAAGATGCAACAGCATTCGCCGAAAGGGAGAACATCTTTTTCATGGAGACTTCAGCCCTTGAGTCTATGAATGTTGACAATGCATTCACCCAAGTGTTGACACAAATATATCGTTTGATGACTCGGAAAGCGCTCGAAGCTGGGAACGATCCTGCAGGATTGCCTCAAGGGCAAACGATAAGTGTGGGAAACAAGGATGATGTTTCGGCTGTTAAGAAAGTTGGTTGCTGCTCTGAGTGA 660 0.4788 MASYNRGDDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRTITVDDNKVLKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHITFENVERWLKELRDHTDANIIVMLVGNKADLRHLRAVSTEDATAFAERENIFFMETSALESMNVDNAFTQVLTQIYRLMTRKALEAGNDPAGLPQGQTISVGNKDDVSAVKKVGCCSE* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1420 219 ProSiteProfiles small GTPase Ras family profile. 3 219 IPR001806 GO:0003924|GO:0005525
Ahy18g1420 219 SMART ras_sub_4 12 179 - -
Ahy18g1420 219 Gene3D - 7 217 IPR027417 -
Ahy18g1420 219 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Ahy18g1420 219 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 217 - -
Ahy18g1420 219 SMART rab_sub_5 15 179 - -
Ahy18g1420 219 SMART ran_sub_2 20 218 - -
Ahy18g1420 219 PANTHER DRAB11-RELATED 1 217 - -
Ahy18g1420 219 CDD Rab11_like 12 177 - -
Ahy18g1420 219 ProSiteProfiles small GTPase Rho family profile. 8 188 - -
Ahy18g1420 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 185 IPR027417 -
Ahy18g1420 219 TIGRFAM small_GTP: small GTP-binding protein domain 13 172 IPR005225 GO:0005525
Ahy18g1420 219 PRINTS Transforming protein P21 ras signature 15 36 - -
Ahy18g1420 219 PRINTS Transforming protein P21 ras signature 57 79 - -
Ahy18g1420 219 PRINTS Transforming protein P21 ras signature 119 132 - -
Ahy18g1420 219 PRINTS Transforming protein P21 ras signature 38 54 - -
Ahy18g1420 219 PRINTS Transforming protein P21 ras signature 154 176 - -
Ahy18g1420 219 SMART rho_sub_3 17 175 IPR001806 GO:0003924|GO:0005525
Ahy18g1420 219 ProSiteProfiles small GTPase Rab1 family profile. 10 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1420 Ahy-Chr18 27225932 27230071 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1420 K07904 - egr:104450106 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0948 18 12120272 12122348 Ahy18g1420 18 27225932 27230071 ECH
Ahy13g1634 13 24208460 24211539 Ahy18g1420 18 27225932 27230071 ECH
Ahy18g1420 18 27225932 27230071 Ahy20g0396 20 4044823 4046701 ECH
Ahy18g1420 18 27225932 27230071 Ahy13g3396 13 131309608 131311862 ECH
Ahy18g1420 18 27225932 27230071 Ahy18g1420 18 27225932 27230071 ECH