LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g3396	ATGGGGGCCTACAGAGCGGATGACGATTACGATTACCTCTTCAAGGTGGTGCTGATCGGTGACTCTGGCGTCGGAAAATCGAACCTTCTCTCTCGCTTCACAAGGAATGAGTTCAGCCTTGAATCCAAGTCCACCATTGGTGTTGAGTTCGCCACCAGAAGCATTAAGGTTGATGATAAGGTTGTCAAGGCTCAGATTTGGGACACTGCTGGTCAAGAGAGGTACCGGGCAATTACAAGTGCTTATTATCGAGGAGCTGTTGGTGCTCTACTAGTTTATGATGTTACTCGCCATGTTACGTTTGAAAATGTGGCGAGATGGCTAAAGGAGCTGAGAGATCACACAGATGCCAACATTGTGGTAATGCTTGTAGGAAACAAGGCAGATCTGCGCCATCTGCGAGCAGTTTCCGTCGAAGACGCCACTGCCTTTGCTGAAAGAGAGAGCACATTTTTCATGGAAACATCTGCCCTTGAGTCGATGAACGTTGAGAATGCCTTCACAGAAGTCCTGACCCAGATCCACAGCGTCGTAAGCAAGAAGGCCCTTGAAGTTGGTAATGATCCAGCAGCATTGCCGAAAGGGCAGACTATCAATGTTGGTTCCCGGGACGACGTCTCAGCCGTGAAAAAAGGTGGATGTTGTTCTAATTGA	654	0.4847	MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIKVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVARWLKELRDHTDANIVVMLVGNKADLRHLRAVSVEDATAFAERESTFFMETSALESMNVENAFTEVLTQIHSVVSKKALEVGNDPAALPKGQTINVGSRDDVSAVKKGGCCSN*	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g3396	217	ProSiteProfiles	small GTPase Rab1 family profile.	9	215	-	-
	Ahy13g3396	217	SMART	ras_sub_4	11	177	-	-
	Ahy13g3396	217	SMART	ran_sub_2	19	214	-	-
	Ahy13g3396	217	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	9	181	IPR027417	-
	Ahy13g3396	217	Gene3D	-	6	215	IPR027417	-
	Ahy13g3396	217	Pfam	Ras family	15	175	IPR001806	GO:0003924\|GO:0005525
	Ahy13g3396	217	PANTHER	DRAB11-RELATED	1	215	-	-
	Ahy13g3396	217	SMART	rab_sub_5	14	177	-	-
	Ahy13g3396	217	PRINTS	Transforming protein P21 ras signature	117	130	-	-
	Ahy13g3396	217	PRINTS	Transforming protein P21 ras signature	14	35	-	-
	Ahy13g3396	217	PRINTS	Transforming protein P21 ras signature	55	77	-	-
	Ahy13g3396	217	PRINTS	Transforming protein P21 ras signature	37	53	-	-
	Ahy13g3396	217	PRINTS	Transforming protein P21 ras signature	152	174	-	-
	Ahy13g3396	217	ProSiteProfiles	small GTPase Ras family profile.	8	217	IPR001806	GO:0003924\|GO:0005525
	Ahy13g3396	217	PANTHER	RAS-RELATED PROTEIN RABA1F-LIKE	1	215	-	-
	Ahy13g3396	217	SMART	rho_sub_3	16	180	IPR001806	GO:0003924\|GO:0005525
	Ahy13g3396	217	TIGRFAM	small_GTP: small GTP-binding protein domain	12	170	IPR005225	GO:0005525
	Ahy13g3396	217	CDD	Rab11_like	11	175	-	-
	Ahy13g3396	217	ProSiteProfiles	small GTPase Rho family profile.	7	186	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g3396	Ahy-Chr13	131309608	131311862	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g3396	15	167	EF-hand Containing Proteins	AT5G27540	27.273	3.82e-08	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy13g3396	K07904		-	gmx:100805995	404.831

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy13g3396	13	131309608	131311862	Ahy13g3396	13	131309608	131311862	ECH
	Ahy20g0396	20	4044823	4046701	Ahy13g3396	13	131309608	131311862	ECH
	Ahy18g1420	18	27225932	27230071	Ahy13g3396	13	131309608	131311862	ECH
	Ahy18g0948	18	12120272	12122348	Ahy13g3396	13	131309608	131311862	ECH
	Ahy13g1634	13	24208460	24211539	Ahy13g3396	13	131309608	131311862	ECH