Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0948 ATGGGTAGCGCTTACAAAGCAGAGGAAGAGTACGACTACTTGTACAAGGTGGTGCTGATCGGAGACTCAGGTGTTGGGAAGTCGAACCTGTTGTCGAGGTTCACCAAGAACGAGTTCACCTTGGACTCAAAGTCCACCATTGGCGTCGAGTTCGCCACCCGAACCGTCCATGTTCACGACAAGATCGTCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAAAGATACCGGGCAATCACAAGTGCTTATTACCGAGGAGCTGTAGGTGCATTGGTTGTGTATGACATCAGCAGGCATGTGACCTTTGAGAACGTGGAGAGATGGCTGAAGGAGCTTCGCGACCACACGGACGCCAACCTCGTCGTCATGCTGGTGGGGAACAAGGCGGATCTACGGCACCTGCGTGCCGTGCCAACGGAGGAAGCCAAGGAGTTTGCTGAGAGAGAGAAGATATACTTCATGGAAACATCAGCACTTGAGTCTTTGAATGTGGACAGTGCCTTCACAGAAGTGCTAACTCAGATATACAATGTTGTGAGTAGGAAGAGCCTTGAGGCTGTGAATGACACTGCAGCATTGCCAAAGGGACAGACCATAAATCTTGGAAGCAAAGATGATGTCTCAGCTGTTAAGAAATCTGGTTGCTGCTCGGCATAG 657 0.5068 MGSAYKAEEEYDYLYKVVLIGDSGVGKSNLLSRFTKNEFTLDSKSTIGVEFATRTVHVHDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDISRHVTFENVERWLKELRDHTDANLVVMLVGNKADLRHLRAVPTEEAKEFAEREKIYFMETSALESLNVDSAFTEVLTQIYNVVSRKSLEAVNDTAALPKGQTINLGSKDDVSAVKKSGCCSA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0948 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 187 IPR027417 -
Ahy18g0948 218 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 4 215 - -
Ahy18g0948 218 Pfam Ras family 16 176 IPR001806 GO:0003924|GO:0005525
Ahy18g0948 218 CDD Rab11_like 12 176 - -
Ahy18g0948 218 SMART ras_sub_4 12 178 - -
Ahy18g0948 218 PANTHER DRAB11-RELATED 4 215 - -
Ahy18g0948 218 ProSiteProfiles small GTPase Rho family profile. 8 199 - -
Ahy18g0948 218 SMART rab_sub_5 15 178 - -
Ahy18g0948 218 TIGRFAM small_GTP: small GTP-binding protein domain 13 171 IPR005225 GO:0005525
Ahy18g0948 218 ProSiteProfiles small GTPase Rab1 family profile. 10 216 - -
Ahy18g0948 218 SMART ran_sub_2 20 209 - -
Ahy18g0948 218 Gene3D - 7 216 IPR027417 -
Ahy18g0948 218 PRINTS Transforming protein P21 ras signature 15 36 - -
Ahy18g0948 218 PRINTS Transforming protein P21 ras signature 153 175 - -
Ahy18g0948 218 PRINTS Transforming protein P21 ras signature 38 54 - -
Ahy18g0948 218 PRINTS Transforming protein P21 ras signature 56 78 - -
Ahy18g0948 218 PRINTS Transforming protein P21 ras signature 118 131 - -
Ahy18g0948 218 SMART rho_sub_3 17 178 IPR001806 GO:0003924|GO:0005525
Ahy18g0948 218 ProSiteProfiles small GTPase Ras family profile. 9 218 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0948 Ahy-Chr18 12120272 12122348 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0948 K07904 - gmx:100781889 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0948 18 12120272 12122348 Ahy18g1420 18 27225932 27230071 ECH
Ahy18g0948 18 12120272 12122348 Ahy18g0948 18 12120272 12122348 ECH
Ahy18g0948 18 12120272 12122348 Ahy20g0396 20 4044823 4046701 ECH
Ahy18g0948 18 12120272 12122348 Ahy13g3396 13 131309608 131311862 ECH
Ahy18g0948 18 12120272 12122348 Ahy8g1696 8 34584052 34586041 hybridization