Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1068 ATGTCCAACTCTCTCCTTCTTCTTCCTCCTTCTTCCTCTTCTTATTCTCAACCCCATTCACCTCTCACTCTCACTTTCTTTAATTCACGGAGGAAGAGACGCCCTTGCAGATATTCCAGAGCGACAATGTGCTCCTCTCATAATTCCCATCCCCCAAACGACGTCGTTGTTGGGTGTGGAGCGGCGTCGGTGGATTTCTTGGCTACCGTTGCTTCTTACCCTAACCCTGATGACAAAATCAGAAGCATCAACTTGAAGGTTCAAGGAGGTGGAAATGCAGGCAATGCTTTAACTTGTGTTGCTAGATTGGGCCTCAAGCCAAGGATCATCTCCAAAGTAGCAGATGATAGTCAAGGCAGGAGCATACTAGATGAGTTACACGCTGATGGTGTAGATGCATCCTTTATTGTGGTGTCTAAGGAGGGAACTTCACCATTTACATATATTATTGTGGACAACGAAACGAAGACCCGTACTTGCATACATACCCCAGGATATCCTCCAATGATACCACAGGATCTTTCTGAATCAAGTCTGTTAACTGCATTGAATGGAGCAAACATTGTTTACTTTGATGGGAGGTTATATGAAACTGCTCTTGTTGTTGCCCAAGAGGCAGTTAGGAAGAATATACCCATCTTAATTGATGCAGAAAGGCCAAGGGAAGGGTTGGATGATCTCCTGAAATTTGCTAATTATGTTGTATGCTCAGCAAAGTTTCCACTAGCATGGACAGGAGCATCAACTATTCCACAAGCACTTGTTTCTATTCTCTTAAGATTGCCCAACATCAGATTTGTGATTGTGACCTTGGGAAAAGATGGTTGCATAATGCTTGAGAGAAATCTTGATGTGGCCTCTTCCACAGAGGAAGTGGATATAGACAGCTTAGTGGAGTCACTGAAGATGACAACAAATGAGAGTGTATTACACCCAACCTGTATATCATCGGATTGTTGCAACTGCATCGGAGCCACAATGGGCTCGTCTCTGTCAGTGGCAACACTGAAGGCAGAAGGGATAGGAACAGTCAATGGGAGGATATATGTGGGAACAGCCGAGAGCATTCCTCCTTTGGAGCTTATTGACACCACTGGTGCCGGGGATGCATTTATTGGAGCTGTGATCTATGCTATCTGTGCCAACTTTTCGCCAGAGACAATGCTTTCCTTTGCTGCTAATGTGGCAGCTGCCAAGTGTCGAGATTTAGGAGCACGCAGTGGTCTTCCATATCGTGCTGACCCACGCATAGCTTCCTTCATGCAGTAG 1269 0.4531 MSNSLLLLPPSSSSYSQPHSPLTLTFFNSRRKRRPCRYSRATMCSSHNSHPPNDVVVGCGAASVDFLATVASYPNPDDKIRSINLKVQGGGNAGNALTCVARLGLKPRIISKVADDSQGRSILDELHADGVDASFIVVSKEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPQDLSESSLLTALNGANIVYFDGRLYETALVVAQEAVRKNIPILIDAERPREGLDDLLKFANYVVCSAKFPLAWTGASTIPQALVSILLRLPNIRFVIVTLGKDGCIMLERNLDVASSTEEVDIDSLVESLKMTTNESVLHPTCISSDCCNCIGATMGSSLSVATLKAEGIGTVNGRIYVGTAESIPPLELIDTTGAGDAFIGAVIYAICANFSPETMLSFAANVAAAKCRDLGARSGLPYRADPRIASFMQ* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1068 422 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 44 421 - -
Ahy12g1068 422 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 363 376 IPR002173 GO:0016773
Ahy12g1068 422 Pfam pfkB family carbohydrate kinase 335 410 IPR011611 -
Ahy12g1068 422 Pfam pfkB family carbohydrate kinase 59 281 IPR011611 -
Ahy12g1068 422 SUPERFAMILY Ribokinase-like 56 414 IPR029056 -
Ahy12g1068 422 CDD ribokinase_group_B 55 411 - -
Ahy12g1068 422 PRINTS Ribokinase signature 267 278 IPR002139 GO:0016301
Ahy12g1068 422 PRINTS Ribokinase signature 85 104 IPR002139 GO:0016301
Ahy12g1068 422 PRINTS Ribokinase signature 58 79 IPR002139 GO:0016301
Ahy12g1068 422 Gene3D - 55 407 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1068 Ahy-Chr12 25039960 25046063 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1068 - - mtr:MTR_1g069320 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1068 12 25039960 25046063 Ahy12g1068 12 25039960 25046063 ECH
Ahy12g1068 12 25039960 25046063 Ahy2g0976 2 22394828 22400768 hybridization
Ahy16g1442 16 29478398 29481855 Ahy12g1068 12 25039960 25046063 PCT
Ahy6g0039 6 628930 632416 Ahy12g1068 12 25039960 25046063 PCT
Ahy12g1068 12 25039960 25046063 Ahy16g1442 16 29478398 29481855 PCT
Ahy12g1068 12 25039960 25046063 Ahy6g0039 6 628930 632416 PCT