Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2539 ATGTCGATGAGTGAGCGGAAGACCATCGACCTGGAGCAGGGATGGGATTTCATGCAGAAGGGCATCACCAAGCTCAAGAACATTCTAGAAGGCTTGCCTGAACCTCAGTTCAGCTCCGAGGACTACATGATGCTTTACACAACCATCTATAACATGTGCACCCAAAAGCCTCCTCATGACTATTCCCAACAACTCTATGACAAGTACAAGGAGGCATTTGAAGAGTACATCCAATCAACGGTTTACAAGGAGCTAAATGGAAAAGTTAGAGATGCAGTTATTTCTCTTATTGATCAAGAACGTGAAGGAGAGCAGATTGATCGGGCTTTATTAAAGAATGTATTAGATATATTTGTTGAAATTGGGATGGGGCAAATGGATCACTATGAGAATGATTTTGAAACTGCAATGCTTAAAGACACTTCTGCTTATTACTCTCGAAAGGCTTCTAGTTGGATCCTAGAAGATTCTTGTCCTGATTACATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGAGTTGCTCATTATTTGCACTCCAGTAGCGAGCCAAAGTTGTTAGAGAAAGTTCAACATGAGCTGTTATCTGTGTACGCAAACCAACTCCTCGAGAAAGAGCACTCTGGATGTCATGCTTTGCTTAGAGATGACAAGGTTGAAGATCTGTCACGGATGTTCAGGCTATTTTCTAAAATACCTAAAGGCTTAGATCCTGTTTCCAGTATATTTAAGCAGCATGTTACCACTGAGGGTATGGTATTGGTTAAGCAGGCTGAAGATGCAGCTAGTACCAAAAAGGCAGATAAAAAGGATATCGTTGGTCTGCAGGAGCAGGTTTTTGTCCGGAAAGTGATTGAGCTGCACGACAAGTACCTCGCATATGTAAATGACTGTTTCCAGAATCATACTCTTTTCCACAAGGCTCTCAAGGAGGCTTTTGAGGTCTTTTGCAATAAAGGTGTTGCTGGGAGCTCGAGCGCTGAACTGCTTGCCACATTCTGTGACAACATTCTTAAGAAAGGTGGCAGTGAAAAATTGAGTGACGAAGCAATTGAAGAAACTCTGGAAAAGGTGGTCAAGCTACTTGCCTACATTAGCGACAAAGATTTGTTTGCTGAATTTTATAGGAAGAAGCTTGCTCGAAGACTTCTTTTTGACAAGAGTGCCAACGATGATCATGAGAGAAGTATTTTGACAAAATTGAAGCAACAATGTGGTGGACAGTTTACATCAAAGATGGAAGGAATGGTTACAGACTTGACACTGGCAAAGGAGAATCAAACTAGCTTTGAGGAGTATTTAAGCAATAATCCTAATGCAGACCCTGGAATAGACTTGACAGTTACAGTTCTGACTACTGGCTTCTGGCCCAGTTACAAATCTTTTGATCTCAATCTTCCAGCGGAAATGATCAGGTGCGTTGAAGTTTTCAAGGAATTTTATCAAACTAAAACAAAGCACAGAAAGCTTACATGGATTTACTCCTTGGGTACCTGTAATATAAGTGGGAAATTTGAACCAAAAACTGTGGAGCTGATTGTTACAACCTACCAGGCTTCAGCATTGCTTCTTTTCAATTCCTCGGATAGACTCAGTTATTCGGAGATCATGACTCAGTTAAACCTATCGGATGATGATGTTTCTAGACTGCTTCACTCTATGTCATGTGCGAAGTACAAGATTCTTAACAAAGAACCAAACACAAAAATGATATCTTCTACAGATGAATTTGAATTCAATTCAAAATTTACCGACAAAATGAGGAGGATCAAGATTCCTCTCCCTCCTGTGGACGAGAAGAAAAAGGTAATTGAGGATGTTGACAAGGATAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGCAAAGTTTTGGGATACCAACAGTTAGTCATGGAATGTGTTGAGCAGTTAGGTCGCATGTTTAAGCCTGACGTCAAGGCAATTAAAAAGCGGATTGAAGATTTGATTTCTCGGGACTACTTGGAAAGAGACAAAGAAAATCCAAATATGTTCAAGTACTTGGCTTGA 2049 0.4056 MSMSERKTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYKEAFEEYIQSTVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFETAMLKDTSAYYSRKASSWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPKGLDPVSSIFKQHVTTEGMVLVKQAEDAASTKKADKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMIRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVSRLLHSMSCAKYKILNKEPNTKMISSTDEFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKENPNMFKYLA* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2539 682 SMART Cullin_Nedd8_2 609 676 IPR019559 -
Ahy11g2539 682 Gene3D - 599 682 IPR036388 -
Ahy11g2539 682 PANTHER CULLIN 3B 80 681 - -
Ahy11g2539 682 PANTHER CULLIN 3B 2 81 - -
Ahy11g2539 682 SUPERFAMILY "Winged helix" DNA-binding domain 597 682 IPR036390 -
Ahy11g2539 682 Gene3D Cullin Repeats 328 441 - -
Ahy11g2539 682 SMART cul_2 358 507 IPR016158 -
Ahy11g2539 682 Pfam Cullin family 81 585 IPR001373 GO:0006511|GO:0031625
Ahy11g2539 682 ProSiteProfiles Cullin family profile. 327 557 IPR016158 -
Ahy11g2539 682 Gene3D Cullin Repeats 79 201 - -
Ahy11g2539 682 Gene3D Cullin Repeats 205 327 - -
Ahy11g2539 682 SUPERFAMILY Cullin homology domain 326 595 IPR036317 -
Ahy11g2539 682 Pfam Cullin protein neddylation domain 612 674 IPR019559 -
Ahy11g2539 682 PANTHER CULLIN 2 81 IPR045093 -
Ahy11g2539 682 PANTHER CULLIN 80 681 IPR045093 -
Ahy11g2539 682 SUPERFAMILY Cullin repeat-like 11 322 IPR016159 -
Ahy11g2539 682 Gene3D Cullin; Chain C, Domain 2 445 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2539 Ahy-Chr11 141226796 141233953 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2539 K03347 - gmx:100793682 1249.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2539 11 141226796 141233953 Ahy11g2539 11 141226796 141233953 ECH
Ahy11g2539 11 141226796 141233953 Ahy1g2387 1 101950477 101957170 hybridization
Ahy11g2539 11 141226796 141233953 Ahy14g1089 14 19986849 19995066 PCT
Ahy11g2539 11 141226796 141233953 Ahy4g0995 4 19737351 19745563 PCT
Ahy20g0193 20 1707095 1714881 Ahy11g2539 11 141226796 141233953 PCT
Ahy10g0026 10 339430 347310 Ahy11g2539 11 141226796 141233953 PCT
Ahy14g1089 14 19986849 19995066 Ahy11g2539 11 141226796 141233953 PCT
Ahy4g0995 4 19737351 19745563 Ahy11g2539 11 141226796 141233953 PCT