Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g1089 ATGTCTATGAGTGAGCGCAAGACTATTGACCTAGAGCAAGGATGGGACTTTATGCAGAAGGGCATAATGAAGCTGAAGAATATTCTGGAAGGGTTGCCTGAGCCTCAGTTCAGCTCTGAGGACTACATGATGCTTTACACGACCATATATAATATGTGCACTCAGAAGCCTCCTCATGATTATTCCCAGCAACTATATGACAAGTACAAGGAAGCATTTGAAGAATACATCCTGTCAACGGTGTTGCCTTCTTTGAGAGAGAAGCACGATGAATTTATGTTGAGAGAACTTGTGAAGAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGTTTCTTTCACTATTTGGACCGTTACTTTATTGCTCGGAGATCACTTCCACCGCTTAATGAAGTTGGGCTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAATGGGAAAGTGAGAGATGCAGTAATTTCTCTTATTGATCAAGAACGAGAAGGAGAGCAGATTGATCGAGCTCTATTAAAAAATGTATTAGATATATTTGTTGAAATTGGAATGGGTCAAATGGATCACTATGAGAATGATTTTGAAGCATCCATGCTGAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCAAATTGGATCCTAGAAGATTCTTGTCCTGATTATATGCTTAAGGCTGAGGAATGCTTAAAACGAGAGAAAGATAGGGTTGCTCATTACTTGCACTCCAGTAGTGAGCCAAAGCTGTTGGAGAAAGTTCAACATGAGCTGTTATCTGTGTATGCAAATCAACTCCTTGAAAAAGAGCATTCTGGTTGTCATGCATTACTTAGGGATGACAAGGTTGAAGATTTGTCAAGGATGTTCAGGCTCTTTTCTAAAATACCTCGAGGCTTAGACCCTGTTTCCAGTATATTTAAGCAGCATGTTACTGCTGAAGGTATGGCATTGGTGAAGCTGGCTGAAGATGCTGCTAGTAACAAAAAGGCAGAGAAGAAGGATATTATTGGTTTACAGGAGCAGGTTTTTGTTCGGAAGGTGATTGAGCTGCATGACAAGTACCTGGCCTATGTGAATGACTGTTTCCAGAATCACACTCTTTTCCACAAGGCTCTTAAGGAGGCTTTTGAGAACTTCTGCAACAAGGGTGTTGCTGGAAGCTCAAGTGCAGAACTACTTGCCACTTTTTGTGATAACATCCTGAAGAAAGGAGGAAGTGAAAAACTAAGTGATGAAGCAATCGAGGAAACTCTTGAAAAGGTTGTAAAGCTGCTGGCTTATATCAGTGACAAAGATTTGTTTGCTGAATTCTATAGGAAGAAGCTTGCTAGAAGACTTCTTTTTGACAAGAGTGCCAATGATGACCATGAGAGGAGTATTTTGACAAAATTGAAGCAACAATGTGGTGGTCAGTTTACGTCGAAGATGGAAGGAATGGTTACAGATTTGACACTGGCAAAGGAGAACCAAACAAGCTTTGAGGAGTATCTAAGCAATAATCCAAATGCAGATCCTGGAATTGACTTGACAGTTACAGTTCTAACTACTGGCTTCTGGCCAAGTTACAAGTCCTTTGACCTCAATCTTCCAGCAGAAATGGTTAGGTGCGTTGAAGTTTTCAAGGAATTTTATCAAACAAAAACTAAGCACAGAAAGCTTACATGGATTTACTCCTTGGGTACCTGCAATATAAGTGGAAAATTCGAACCAAAAACTATGGAACTAATTGTGACAACATACCAGGCTTCAGCATTGCTTCTATTTAATACCTCGGATAGACTGAGTTATTCTGAGATAATGACTCAGTTAAACTTATCGGATGATGATGTTATTAGACTGTTGCATTCCTTATCATGTGCAAAGTACAAGATTCTTAACAAGGAACCGAGCACAAAGACAATATCTTCTACTGATTATTTTGAATTCAATGCAAAATTTACGGACAAAATGAGGAGGATTAAGATTCCTCTTCCTCCTGTGGATGAGAAGAAAAAAGTAATTGAGGATGTTGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATAATGAAGAGTCGGAAAGTTCTGAACTACCAACAGTTAGTTATGGAATGTGTCGAGCAGTTAGGTCGCATGTTTAAGCCTGATGTCAAGGCGATTAAAAAGCGGATTGAAGATTTGATATCTCGAGACTACTTGGAAAGAGACAAAGATAATGCAAATTTGTTCAGGTACTTAGCATAA 2235 0.3942 MSMSERKTIDLEQGWDFMQKGIMKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYKEAFEEYILSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEASMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTAEGMALVKLAEDAASNKKAEKKDIIGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFENFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTMELIVTTYQASALLLFNTSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILNKEPSTKTISSTDYFEFNAKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLNYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANLFRYLA* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g1089 744 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Ahy14g1089 744 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Ahy14g1089 744 Gene3D Cullin Repeats 390 503 - -
Ahy14g1089 744 Gene3D Cullin Repeats 142 264 - -
Ahy14g1089 744 SMART cul_2 420 569 IPR016158 -
Ahy14g1089 744 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Ahy14g1089 744 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
Ahy14g1089 744 Coils Coil 322 342 - -
Ahy14g1089 744 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
Ahy14g1089 744 Gene3D Cullin; Chain C, Domain 2 507 660 - -
Ahy14g1089 744 SUPERFAMILY "Winged helix" DNA-binding domain 659 744 IPR036390 -
Ahy14g1089 744 Gene3D - 661 744 IPR036388 -
Ahy14g1089 744 PANTHER CULLIN 2 743 IPR045093 -
Ahy14g1089 744 Gene3D Cullin Repeats 3 141 - -
Ahy14g1089 744 Pfam Cullin family 26 647 IPR001373 GO:0006511|GO:0031625
Ahy14g1089 744 Gene3D Cullin Repeats 267 389 - -
Ahy14g1089 744 PANTHER CULLIN 3B 2 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g1089 Ahy-Chr14 19986849 19995066 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g1089 K03347 - aprc:113853141 1461.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1089 14 19986849 19995066 Ahy14g1089 14 19986849 19995066 ECH
Ahy14g1089 14 19986849 19995066 Ahy4g0995 4 19737351 19745563 hybridization
Ahy11g2539 11 141226796 141233953 Ahy14g1089 14 19986849 19995066 PCT
Ahy1g2387 1 101950477 101957170 Ahy14g1089 14 19986849 19995066 PCT
Ahy14g1089 14 19986849 19995066 Ahy11g2539 11 141226796 141233953 PCT
Ahy14g1089 14 19986849 19995066 Ahy1g2387 1 101950477 101957170 PCT