Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2466 ATGGAAATAGAAGCAAACAGTAGTAGCCCGGTGGTGGTAAAGAAGGTATGGAGCATCGTACGCGTGTTGTTGTTCATGTTGAGAAAGGGCATAGCGAAGAGCAGAATAATGGGTGAGTTTCATCTCATGCTGAAACGTGGCAAACTAGCAGGGAAGGCCATAGTCAACAACATCATCATGTACAACAACAACAACAACAACTTCAACTTCATCTCCCCTCGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCCATTCCCATCATTAAACGCAGTAGCAACAAGCGTTTCTTCACCAAATCCCACGACGTTTCCACCCTCACCGCTGTTCAGAAGGTTCTCGAGATCCTCAACAACAACAACAACAACGACAACATTAATTCTCCTTCTCCCTTCGGAAAGAGCCCTGTTGTCAGACAACTAAGAGTCACCGACTCACCCTTTCCTCTCAAGGACGACGGGGATACCCAAGTCGACAAGGCAGCCGAAGAATTCATTAAGAAGTTCTATAAAGACCTCAACTTGCAAAAAAACATGCCATATCTTGAATCCCCTTATCATTTTTCTTGGGACAGATGCTAA 582 0.4588 MEIEANSSSPVVVKKVWSIVRVLLFMLRKGIAKSRIMGEFHLMLKRGKLAGKAIVNNIIMYNNNNNNFNFISPRDYEFSCSNSPAIPIIKRSSNKRFFTKSHDVSTLTAVQKVLEILNNNNNNDNINSPSPFGKSPVVRQLRVTDSPFPLKDDGDTQVDKAAEEFIKKFYKDLNLQKNMPYLESPYHFSWDRC 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2466 193 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 5 188 - -
Aed5g2466 193 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 5 188 - -
Aed5g2466 193 Pfam Cotton fibre expressed protein 156 179 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2466 Aed-Chr5 25905496 25906077 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2466 - - gmx:100305871 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2466 5 25905496 25906077 Aed2g0225 2 1482842 1483396 ECH
Aed5g2466 5 25905496 25906077 Aed1g1411 1 12973931 12974515 ECH
Aed5g2466 5 25905496 25906077 Aed5g2466 5 25905496 25906077 ECH
Aed5g2466 5 25905496 25906077 Aed7g0079 7 539304 539834 PCT