Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1411 ATGAAAGAAATAGAGATGGAAAGTAACGCACCAGTACTGGCAAAGAAGGTGTGGAGCATGGCACGTGTGGTGTTCTTCATGCTTCGAAAAGACATATCAAAGGGGAAGCTCATGATGGATCTCAACATGATGCTGAAACGCAGCGGCAAGCTCGCCAGCAAAGCCATTGCCAACCTAATGCCCCATCACCACCACCACCACGGTGGGTCCCACGATGCACACGTTCAGTTCTCTTCAGGCCAAAGGGAGTACGAGTTCAGCTGCAGCAACACTCCCCACAACTTCTTCTTCCCCAGTACTTCAACAGGGAAGCGCCACCGCCACTTCTTCGCGTGCGCCCACGCGCCCCCCACACAGGACGACGACGTTGTGACAGTGTTGGAGATGTTCAACAACAACAACGACACGTCATCGTCCCCTGCGCTGCCAGGGTTTGGACGGAGCCCTATGGTGAGGCAGCTTATAAGGGTTACGGACTCACCGTTCCCTCTGAGAGACTCCGATCATGACAACGATCACCAGGTCGATAAGGCCGCCGAAGACTTCATTAAGAGGTTTTACAACGACTTGAACAACCAGGATTAA 585 0.5299 MKEIEMESNAPVLAKKVWSMARVVFFMLRKDISKGKLMMDLNMMLKRSGKLASKAIANLMPHHHHHHGGSHDAHVQFSSGQREYEFSCSNTPHNFFFPSTSTGKRHRHFFACAHAPPTQDDDVVTVLEMFNNNNDTSSSPALPGFGRSPMVRQLIRVTDSPFPLRDSDHDNDHQVDKAAEDFIKRFYNDLNNQD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1411 194 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 6 193 - -
Aed1g1411 194 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 193 - -
Aed1g1411 194 Pfam Cotton fibre expressed protein 173 191 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1411 Aed-Chr1 12973931 12974515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1411 - - gsj:114386903 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0225 2 1482842 1483396 Aed1g1411 1 12973931 12974515 ECH
Aed5g2466 5 25905496 25906077 Aed1g1411 1 12973931 12974515 ECH
Aed7g0079 7 539304 539834 Aed1g1411 1 12973931 12974515 ECH
Aed1g1411 1 12973931 12974515 Aed1g1411 1 12973931 12974515 ECH
Aed1g1411 1 12973931 12974515 Aed2g0225 2 1482842 1483396 PCT