Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed1g1409 | ATGATTGATCTTACGGCTTCAAACAACTTGATGCACCTCACTCACCACGGAGCTTTCCAACATCATAGTCCTCCTCTTTTCGTGGTAGTGATTACTGAGGGCAACTCAGGGTTAGGTGGGTGTAGCAGCTTGTGTGATGCGCAGAAAAAGCGTTCAACTCGTTTCAGGGTGGTGTGCATGACCCCTAGCAGCAACAGCAGCAGGTCCGGTGATAGAAACGGCAGCGTTGTGATGGAGACGCCGTTGAAAGAGTTGAAAAAGGAATCCACGGTAGCTGACGAGGACGATAACGCCATCTCCGCCGGCGGCCCTCAAGATGTGTACGGCGAGGATAAGGCCACGGAGGATCACTTTGTTACCCCTTGGAGTGTTTCTGTTGCCAGTGGCTATACACTGTTGCGAGATCCCCACTTCAACAAAGGGCTGGCCTTCACTGAAGATGAGAGGGATGCCCACTACTTGCGTGGTCTTCTTCCCCCATCAGTTATCTCTCAAGACACTCAGGTGAAGAAAATGATCCAGCACGTACGCCAGTATCATGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAACGAGCGGCTATTTTACAAACTTCTTATTGAGCATGTGGAAGAGTTACTCCCTGTTGTATATACTCCAACTGTTGGTGAAGCTTGTCAGAAATATGGGAGCATCTTTATGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAAGATCCGTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATAGTTGTAACTGATGGAGAACGGATATTGGGTCTTGGGGATCTTGGTTGTCAGTGTTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGCTGTTGAATGATGAATTATATATTGGTCTAAAGCAAAGACGAGCAACCGGGCAGGTTCACGATTTGAATATGCTGAACTTATGCACGAATTTATGA | 975 | 0.4667 | MIDLTASNNLMHLTHHGAFQHHSPPLFVVVITEGNSGLGGCSSLCDAQKKRSTRFRVVCMTPSSNSSRSGDRNGSVVMETPLKELKKESTVADEDDNAISAGGPQDVYGEDKATEDHFVTPWSVSVASGYTLLRDPHFNKGLAFTEDERDAHYLRGLLPPSVISQDTQVKKMIQHVRQYHVPLQKYMAMMDLQERNERLFYKLLIEHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKIREVLRNWPEKNIQVIVVTDGERILGLGDLGCQCLPITIDVGTNNEKLLNDELYIGLKQRRATGQVHDLNMLNLCTNL | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed1g1409 | 324 | Pfam | Malic enzyme, N-terminal domain | 193 | 279 | IPR012301 | GO:0004471 | |
| Aed1g1409 | 324 | SMART | malic_2 | 193 | 319 | IPR012301 | GO:0004471 | |
| Aed1g1409 | 324 | SUPERFAMILY | Aminoacid dehydrogenase-like, N-terminal domain | 108 | 314 | IPR046346 | - | |
| Aed1g1409 | 324 | Gene3D | - | 127 | 279 | IPR037062 | GO:0004471 | |
| Aed1g1409 | 324 | PANTHER | MALIC ENZYME | 35 | 279 | - | - | |
| Aed1g1409 | 324 | PANTHER | MALIC ENZYME | 280 | 312 | - | - | |
| Aed1g1409 | 324 | MobiDBLite | consensus disorder prediction | 82 | 107 | - | - | |
| Aed1g1409 | 324 | PRINTS | Malic enzyme signature | 199 | 223 | IPR001891 | GO:0004470|GO:0004471 | |
| Aed1g1409 | 324 | PRINTS | Malic enzyme signature | 259 | 288 | IPR001891 | GO:0004470|GO:0004471 | |
| Aed1g1409 | 324 | Gene3D | - | 280 | 322 | IPR037062 | GO:0004471 | |
| Aed1g1409 | 324 | PANTHER | MALIC ENZYME-RELATED | 35 | 279 | - | - | |
| Aed1g1409 | 324 | PANTHER | MALIC ENZYME-RELATED | 280 | 312 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed1g1409 | Aed-Chr1 | 12947587 | 12953973 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed1g1409 | K00029 | - | gmx:100791514 | 511.531 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aed2g0230 | 2 | 1524408 | 1529610 | Aed1g1409 | 1 | 12947587 | 12953973 | ECH | |
| Aed5g2465 | 5 | 25895765 | 25901311 | Aed1g1409 | 1 | 12947587 | 12953973 | ECH | |
| Aed7g0074 | 7 | 491226 | 498060 | Aed1g1409 | 1 | 12947587 | 12953973 | ECH | |
| Aed1g1409 | 1 | 12947587 | 12953973 | Aed1g1409 | 1 | 12947587 | 12953973 | ECH | |
| Aed1g1409 | 1 | 12947587 | 12953973 | Aed10g0060 | 10 | 412144 | 416971 | ECH | |
| Aed1g1409 | 1 | 12947587 | 12953973 | Aed2g0230 | 2 | 1524408 | 1529610 | PCT |