Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1239 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAACTTCAAGAAGAGGGATGCATGCCAAAGTTGTGGATACCCCAAATTTGGAGGCCCTGACCCTACAACATATAGATACAACAACTGGACTACTACTGAAACCTTGGCAGGGGACTGGTATTGCACTGCCATGAACTGTGGAGCTCACAACTATGCCAGCAGATCAAGCTGCTATAGATGTGCAGCATTCAAAGATGGTTGTTACTCTGTCTCTGGAGGATATGCTTCTGATTGCAATTACCCCCCAGGCTGGAAAACTGGTGACTGA 315 0.4762 MSWSGGDWMCGACQHINFKKRDACQSCGYPKFGGPDPTTYRYNNWTTTETLAGDWYCTAMNCGAHNYASRSSCYRCAAFKDGCYSVSGGYASDCNYPPGWKTGD 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1239 104 Gene3D - 1 35 - -
Aed10g1239 104 Gene3D - 44 82 - -
Aed10g1239 104 PANTHER ZINC FINGER PROTEIN 1 104 - -
Aed10g1239 104 SMART zf_4 53 79 IPR001876 -
Aed10g1239 104 SMART zf_4 6 30 IPR001876 -
Aed10g1239 104 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 104 - -
Aed10g1239 104 Pfam Zn-finger in Ran binding protein and others 6 31 IPR001876 -
Aed10g1239 104 Pfam Zn-finger in Ran binding protein and others 52 78 IPR001876 -
Aed10g1239 104 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Aed10g1239 104 SUPERFAMILY Ran binding protein zinc finger-like 50 81 IPR036443 -
Aed10g1239 104 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Aed10g1239 104 ProSitePatterns Zinc finger RanBP2-type signature. 55 76 IPR001876 -
Aed10g1239 104 ProSiteProfiles Zinc finger RanBP2 type profile. 51 82 IPR001876 -
Aed10g1239 104 SUPERFAMILY Ran binding protein zinc finger-like 2 34 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1239 Aed-Chr10 12497580 12498529 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1239 - - gmx:100792208 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1239 10 12497580 12498529 Aed2g0144 2 986091 987715 ECH
Aed10g1239 10 12497580 12498529 Aed10g1239 10 12497580 12498529 ECH
Aed6g1748 6 21056621 21057536 Aed10g1239 10 12497580 12498529 PCT
Aed10g1239 10 12497580 12498529 Aed6g1749 6 21063049 21064596 PCT