Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0144 ATGAGCAGGCCAGGAGACTGGAATTGCAGGTCATGCCAGCACCTGAACTTTCAGAGGAGAGATTCATGCCAGCGATGTGGGGACTCAAAATATGGAGAGAGAGTTGAATTTGGTGGGTTTGGAGGAAGAGGAGGGTCTTCATTTGGGTTAACTGGGTCAGATGTTCGCCCTGGTGACTGGTACTGTGCTGCTGCTAACTGTGGTGCACACAACTTTGCTAGCCGCTCAAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGAGTTGGCTGGAGGAGCCTTTAACACTTCTGACATCTTACGCTCAAGAGCTTTTGCTGCCACTGGAAGACCTGGTTGGAAATCTGGTGATTGGATATGCAGCAGCAGATCAGGATGCAATGAGCACAACTTTGCTAGCAGAATGGAATGTTTTAAATGCAGTGCTCCAAGGGACACGTACTAG 441 0.4921 MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYGERVEFGGFGGRGGSSFGLTGSDVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDELAGGAFNTSDILRSRAFAATGRPGWKSGDWICSSRSGCNEHNFASRMECFKCSAPRDTY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0144 146 SUPERFAMILY Ran binding protein zinc finger-like 108 144 IPR036443 -
Aed2g0144 146 SMART zf_4 5 29 IPR001876 -
Aed2g0144 146 SMART zf_4 115 142 IPR001876 -
Aed2g0144 146 SMART zf_4 58 84 IPR001876 -
Aed2g0144 146 ProSitePatterns Zinc finger RanBP2-type signature. 60 81 IPR001876 -
Aed2g0144 146 ProSiteProfiles Zinc finger RanBP2 type profile. 113 145 IPR001876 -
Aed2g0144 146 Gene3D - 51 87 - -
Aed2g0144 146 Gene3D - 108 145 - -
Aed2g0144 146 Gene3D - 2 32 - -
Aed2g0144 146 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Aed2g0144 146 PANTHER BNAA03G57490D PROTEIN 1 145 - -
Aed2g0144 146 PANTHER ZINC FINGER PROTEIN 1 145 - -
Aed2g0144 146 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Aed2g0144 146 SUPERFAMILY Ran binding protein zinc finger-like 2 32 IPR036443 -
Aed2g0144 146 Pfam Zn-finger in Ran binding protein and others 3 28 IPR001876 -
Aed2g0144 146 Pfam Zn-finger in Ran binding protein and others 56 83 IPR001876 -
Aed2g0144 146 Pfam Zn-finger in Ran binding protein and others 113 143 IPR001876 -
Aed2g0144 146 SUPERFAMILY Ran binding protein zinc finger-like 51 86 IPR036443 -
Aed2g0144 146 ProSiteProfiles Zinc finger RanBP2 type profile. 56 87 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0144 Aed-Chr2 986091 987715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0144 - - gmx:100527535 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1748 6 21056621 21057536 Aed2g0144 2 986091 987715 ECH
Aed10g1239 10 12497580 12498529 Aed2g0144 2 986091 987715 ECH
Aed2g0144 2 986091 987715 Aed2g0144 2 986091 987715 ECH