Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01508 ATGCCGACGCCGGTCAGCGTAGCAAGGCAATGCTTGACGGAGGAGGCCGCTCGCGTTTTGGACGATGCGGTGGCGGTTGCTCGCCGCCGCAACCATGCGCAGACAACTTCGCTTCATGCTATCTCTGCCTTGCTCGCCTTGCCTTCTTCCCCTCTCAGGGATGGTTGCACTCGCGCGCGTAGCTGCTCATATTCTCCGCGTTTACAATTCAAAGCTTTAGAGCTCTCTGTGGGTGTGTCTCTCGACCGATTGCCCACCACTAAGACTCTCGAGGATGACCCTCCGATATCCAATTCACTCATGGCCGCTATAAAGCGATCCCAAGCGAACCAGAGGAGGCATCCAGAGAGTTTTCATTTGATACAGATGCATATGCATCAGCAGCAGCAAGCGGCGTCGTTTTTGAAGGTGGAGCTCAAGCACTTCATTCTGTCCATTCTCGATGATCCGATTGTGAGCAGAGTTTTTGGGGAAGCTGGTTTTCGAAGCTGTGACATCAAGCTGGCATTGCTTCAGCCGCCTATAGCGCAAGCTTCTCGATTCTACCGGGGGCGTTACCCACCTTTATTTTTGTGCAATCTAACAGATGGAGACGAGAATTGTAGAAGAATTGCGGAGGTTCTTGTGAGGAAGACAAAGAAGAATCCCTTACTGATGGGTGTTTACGCGAAGGGTGCTCTTAGGAGATTCACTGACACTGTACAGAGAGATCGAGTGGGTATGTTGCGGGCTGATATCGCTGGGCTTGATATGATTTGCATTGAGAAGGAGATTGCTGAGTTTTTTGTTGAAGGTTGTAGTGAAGAAAAGATGGGTTTAAAATTTAAGGAATTGAGTCGTGCAGTCGAGCAGTGCTCAGGTCCGGGTATCGTTGTGAATTTTGGAGAGCTTGAGGCATTTTTGGGGGATGGTGTGCCTGGTGTTGCTGTGAATTTTGTGGTCTCACAACTGACAAGCTTATTGGAAGTCCATGGTGAGAAATTATGGTTGGTAGGCATGGCAGGAACCTCCGTTATATATTCCAAGTTTTTAACTATGTTCCCAACTGTGGAAAAGGATTGGGATCTGCATCTGCTGACCATGACATCTGCCTCCCCTTCAATTGAGGGGCTTTACTCTAAATCCAGTTTGATGGGGTCCTTTGTGCCATTTGGTGGTTTCTTTTCTACACCACCTGAATTCAAAAACCCAGTAGGCTTTACAAATCAATCTTCTTCAAACTGTCATGCAAGCAATGAGAAGTATGAACAAGAAGTTGGTGTCGGTGATATTTTGAAGGTAGATCCTGCAACTTCAGCATCTAGTCACTCAATGATCACCCCTCCGATGCAACAGGTTAATGTGGATAAAGATAAACGATTGGATGTTGCAAAGACTAATGATGAATTCACCAGTTTGAATGCTACTATGTTGGGATTGCAAAAGAAGTGGACTGATAATTGTCAGCGTCTTCATCACAACGAGTCATTTCCTGACTTAAATATATCCCAAACAAAGGCTCAACTTCCCTCTCTTGACGGCTTACCATTTGATTTGGGTTTTAGAGAAAGCATAAGTAATAAAGATCTATCAGTTGATCAAATTCAACATTCTAAATATGGTCTTTACATGCCCAAAGAGTTACCTAGCATTTACCCATCAAGGCAGATGTTACATGTTTCTTCAGAAACTTCGGGCATTGATACAAGAACTGACAAGGGAGCAGTTGGTTCAAAGAGTCAACAAACTGACGTGCAGAACCCTTCGGTTGCCCCTTCTCCGAGGGCCAATATGAGTCAGGTTGATCACAGATCTTCTTCTTCCCTTTCTTCTGTGACCACTGATTTGGGATTGGGAACGCTATATGAATCAGCAGCTCGGGAGCCAAATACTCCAAGAGTACAAGATCATAGAGAGAGTATACACCACTTTTCGGACTCCATTTCAGCTGATCTTGATGTTATGAATGAAAATACTTCTCACCATATTGCTCAATCCTCTCCTTGCTCTGGTCCCATGGAAGGGAAACTGGCTTCACTAGATTTCAAGTCACTTAACCAGCTTCTTACTGAAAGAGTTAGCTGGCAAGCAGAGGCCATATTTGCCATCAGTCGAACCATGAACCTTTGTAGATGTGGCACCGGAAAGCATAGTGGTTCACATGCTAGAGCAGATGTATGGCTTGCTTTCCTTGGACCTGATAGAGTTGGAAAGAAGAAAATTGCTCTAGCACTTACAGAGATAATATTTGGAAATACAGAAAGGCTAATCTCTGTGGATATAGGTTCCCAAGACAGAGGCTACCCATTAAATGCGGCTTCTGAATGCCAAAAGTCAATTGGTCATGACGTGCTCAGGAGGAAGACAGCCGTGGACTATATTGCTAGGGAGTTGAACAAACAACCCCATTCAGTTGTGTTTCTTGAAAATGTAGATAAAGCTGATTTTCTGGTGCAGAAGAGTTTGCTCCAGGCTATAAGAACAGGTAAATTTCCAGACTCACATGGCAGGGAAATCAGCCTCAATAATGCAATCTTTATTGTAACTTCAAGTGTCTTCAAAGGTGAACACCCTTTTCTTTTGGAGAAGGAGCGTGTGTTTTCTGAAGATAAAATCCTTGAAGCCAAAAGATGTCAAATGCAGGTATTACTCGGACATTCCTCTGAGGATACCATAAGAAGCAGTGACACAAATGTCAGGATATCTCTGGGAAGAGAGGCTTCCAAGCCAGCAATTCTGAACAAAAGAAAACTGAGTGAAAGAAGTGACTCTATAGAACAGGAAACCAAATGCAAGGTACAGAAACAGGTCCTAGAGACATCAAAATCTTTGCTAGATTTGAACATGCCTCTCCAGGAGGTTGAAGAGGACTGGTTCGATGACTTCTGCAGTCAACTTGATGCCAGAATAACTTTTAAGCCCTTCGATTTCGATGCACTTGCTGAGAAAATCTTAAAAAGCATCAGTTCACAGTTTCAGAATACATTTGGATTACAGTTTAAGCTGGAGATTGACTATGAAGTCATGGCACAGATCCTAGCAGCCGCTTGGTTATCTGACAAGAAAAATGCTGTGGAGGATTGGATTGAAAATGTACTGGGCAGAATCTTCAACAAAGCCTTGCAACAATACCAACCTGAACCTCAGCATTCCATGAAACTAGTTACCTGTGAAGGGATTTTTATGGAAGAGCAAGCTCCTGGAGTCTGCCTTCCTGCTAATGTTAACCTCAAGTAA 3216 0.4419 MPTPVSVARQCLTEEAARVLDDAVAVARRRNHAQTTSLHAISALLALPSSPLRDGCTRARSCSYSPRLQFKALELSVGVSLDRLPTTKTLEDDPPISNSLMAAIKRSQANQRRHPESFHLIQMHMHQQQQAASFLKVELKHFILSILDDPIVSRVFGEAGFRSCDIKLALLQPPIAQASRFYRGRYPPLFLCNLTDGDENCRRIAEVLVRKTKKNPLLMGVYAKGALRRFTDTVQRDRVGMLRADIAGLDMICIEKEIAEFFVEGCSEEKMGLKFKELSRAVEQCSGPGIVVNFGELEAFLGDGVPGVAVNFVVSQLTSLLEVHGEKLWLVGMAGTSVIYSKFLTMFPTVEKDWDLHLLTMTSASPSIEGLYSKSSLMGSFVPFGGFFSTPPEFKNPVGFTNQSSSNCHASNEKYEQEVGVGDILKVDPATSASSHSMITPPMQQVNVDKDKRLDVAKTNDEFTSLNATMLGLQKKWTDNCQRLHHNESFPDLNISQTKAQLPSLDGLPFDLGFRESISNKDLSVDQIQHSKYGLYMPKELPSIYPSRQMLHVSSETSGIDTRTDKGAVGSKSQQTDVQNPSVAPSPRANMSQVDHRSSSSLSSVTTDLGLGTLYESAAREPNTPRVQDHRESIHHFSDSISADLDVMNENTSHHIAQSSPCSGPMEGKLASLDFKSLNQLLTERVSWQAEAIFAISRTMNLCRCGTGKHSGSHARADVWLAFLGPDRVGKKKIALALTEIIFGNTERLISVDIGSQDRGYPLNAASECQKSIGHDVLRRKTAVDYIARELNKQPHSVVFLENVDKADFLVQKSLLQAIRTGKFPDSHGREISLNNAIFIVTSSVFKGEHPFLLEKERVFSEDKILEAKRCQMQVLLGHSSEDTIRSSDTNVRISLGREASKPAILNKRKLSERSDSIEQETKCKVQKQVLETSKSLLDLNMPLQEVEEDWFDDFCSQLDARITFKPFDFDALAEKILKSISSQFQNTFGLQFKLEIDYEVMAQILAAAWLSDKKNAVEDWIENVLGRIFNKALQQYQPEPQHSMKLVTCEGIFMEEQAPGVCLPANVNLK 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01508 1071 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Accr4g01508 1071 CDD RecA-like_ClpB_Hsp104-like 674 853 - -
Accr4g01508 1071 Pfam AAA domain (Cdc48 subfamily) 721 845 IPR003959 GO:0005524|GO:0016887
Accr4g01508 1071 ProSiteProfiles Clp repeat (R) domain profile. 8 178 IPR004176 -
Accr4g01508 1071 MobiDBLite consensus disorder prediction 553 605 - -
Accr4g01508 1071 Gene3D - 666 967 IPR027417 -
Accr4g01508 1071 Gene3D - 10 173 IPR036628 -
Accr4g01508 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 674 1009 IPR027417 -
Accr4g01508 1071 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01508 Accr-Chr4 15332585 15337331 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01508 - - gmx:100776148 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01508 4 15332585 15337331 Accr3g02144 3 38257096 38261459 CCT
Accr4g01508 4 15332585 15337331 Accr4g01508 4 15332585 15337331 ECH
Accr4g01508 4 15332585 15337331 Accr3g01398 3 15844103 15850025 ECH
Accr4g01508 4 15332585 15337331 Accr3g02144 3 38257096 38261459 ECH
Accr3g01398 3 15844103 15850025 Accr4g01508 4 15332585 15337331 ECH
Accr5g02103 5 47378055 47381228 Accr4g01508 4 15332585 15337331 ECH