Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01398 ATGCCTACGCCGGTCGGAGTAGCCAAGCACTGCTTGACGCAGGACGCAGCTCGCGCTCTCGAAGAAGCCGTCTCCGTCGCGCGCCGTCGTGGACACCCCCAGACCACCTCTCTCCATGCTGTCTCCGCCTTGCTTTCGTTGCCGTCGTCTACCTTACGTGACGCATGTGCCCGTGCCCGGAACTGTGCCTACTCGCCTCGGCTTCAATTCAAGGCGCTAGAGCTGTGCCTGAGCGTATCGCTTGACCGGGTCCCCTCGACTCAAGTCGCCGACGACCCGCCAGTCTCTAACTCGCTCATGGCCGCCATCAAACGCTCACAGGCGAGTCAGAGAAGGCAGCCCGATAATTTCAACATTTACAATCAAATATCACCGCAACCTACTTCGGTTTCGTGTGTGAAGGTCGAGCTTCAACATTTGATATTATCGATTCTCGATGACCCGGTCGTGAGCCGGGTATTTGGCGAAGCTGGTTTTCGAAACTCCGAGATTAAGCTTGCTATTCTTCGTCCTCTTCCACAGCTACTCAGATACTCACGCTCCAGAGTCCCCCCTATATTCCTCTGCAACTTGACGGAGCATCCGGACCCGGGCCGTCGGAGCTTCAGTTTCCCGTTCCCCGGGTCTTTCGGAACCTGCGACGGCGGAGCTGATAATTACAAAAGGATCGGAGATGTGCTTTGCAGGAGCAGAGGGAGGAATCCCCTGCTTCTGGGTGTATGCGCAGATGATGCTCTGCATAGTTTCACAGAAGATGTTAATAAACAAAGAGATGTTGCTTTGCCAGTGGAGTTATCTGGATTGCGCGTGATATGCATAGGAAAAGATATTTCCAAGTTTGTCTTTGAGAATTGCGATAACGAGACTTTCAGTTCAAGGCTTAAGGAGATTGCTGAAACGATAGAACAGGGAGTAGGACCTGGTTTGGTGGTGAACTTCGGGGACTTGAAGTATTTGATTGATGAGAATGCCTCAAATGAAGCAGTGAATTATATAGTTGCTGAATTGGCGAAGTTGTTGGAGCTTAATTATGGCAAGTTTTGGTTGATGGGAGTTGCGGCTAGCTATGAAAGTTACCTGACATTCATGGCAAGGTTTCCATCTATTGAGAAGGATTGGGACTTGCAGATTCTGCCCATCACATCTACTCGGCCTCAGGATGAATCATATCAGAGGCCTAGGTATAGCTTAATGGATTCATTTGTCCCATTTGGTGGCTTGTTTTCTTCACCTTCTGATTTGAAAGGTCCACTACAAGGCTCATATTATTGTGTTCCTCGCTGCCTTCAATGTGGTGAAAGTTGTGTGCAAGAAGTGCTTCCAGCTTCAAACGAGAGGTTGTCTGCTTTGGCTGCTGATCCTTACCATTCTGATTTACCTCCATGGTTGCGGGCTGCTCACCTTGGCATAACAAAAGGGTTGAATGATAAGACAAAAGAAGACAACGTTCGGCTGGATACTAGTGAAACTGGGCCTATCAAGAAATTGGACAAGACATGCCAGCATCTGCATAATAGTCAGCAATCCTCTGAAGCAATTCAATGTCAAAGTGTCATGAGTTCCCGATGCTCTGATGGTGAAAAGGAAGATGTTGACAATCACAGCAACAAATTTTCAGATGCGTCACCTGGTGGCGTGCACATCGATCTCAATTCAAGCGTGCCCCTTGCAGAGGAGACCATTTCTACACCACATTCAAGTAGTCCGGTTCCAGCTGGTTCCAAAGAGAAGCCAGAGAAACATATTTCTAAAGCCTTGGAGATGTTCCGAAAAGCGGAAAATCTTGAGTCGGGTGACCTAAGATCATGCAACATGTCCAATTCAAGCATGTGTGATGGTAGCCAATTGTCTCCCTCATCTGTGACTTCTGTAACCACAAATCAAGGTACAGGAATTTGCATTTCTCGTACAAGCAACAAATCTCAGAAACCAACTATGGGGAGTCCCAAGGAAATTGCGAATCCCCTCTCTCCAAACCATAATTTCGTTAACAGAGATGTCTTTAAGCATCCAGCCCAGTCTTCATCCTGCTTAAGTTCTGACCATTCTGGACAATATGATCTAAGAAATCCTAAAACTATTTTTGAAGCTCTTGCCAAAAAAGTTACCGGGCAGGATGAAGCCTTGCAAAGCATTGTAAAAACAATATCCTACTGTGAAACAAGCAGGGGCAAATGCCTAGGAGGAAGTCAACGAGAGGGGATATGGATGAATTTTGTAGGAACTGATAGGATTGGTAAGCGGAAAATTGCTGTTTCTCTGGCTGAGATTTTATATGGAAGCCAGGAAAGCTTTATTTCTGTGGATCTAAATTCTGAGGAAATAAATGGACACGATGTGAAATTTAGAGGGAAGACAATTGTGGATGTTTTAGTTGGGGAGTTGTCCAAAAATCCATTGTCTGTGGTTTTCCTTGACAATGTAGACAAGGCTGATATGATGGATCAAAATAGTTTATCTCAAGCTGTCCAGACTGGAAAAATTATAGGCTCGTGTGGAAGAGAAGTTGGTGTAAACAATGCAATAATTGTGACATCTTTCTCAGTTCAAGAAGATAATTTGAATTGCACGCCAAAGACTGAGTTCTCCAGCTATTCTGAGGAAAGAGTATTAAGGACAAAAGGGACACCAATCAAGATGAAGGTTGAACATGTAATTGGAGACATCAGAAGTCCAAGCCTTGCTGTACTTAAATGTTCAACAGAGGCCATTCCCAATCCAATCCTTGTAAATAAAAGAAAGCTGAGTGGCGACAATGCCCTTAATGGTCAGCACAAAAGCTCAGAAATGGCTAAAAGGGCTCACAAAATTTCAAATTGTTTTCTAGATTTGAACGTCCCAGCAGAAGAGAACGAACTGCAATTCATGGATGATGGAAACCCTGAAGGTGTCTTAACTGCAAAACCAAACCCCTGGTTGCAAGAATTGTATAATCAAGTTGATGGAACAATCATCCTGAAACCATACAATTTTGATGCACTTGCAGATAAAGTGTTAAAAATTATCCGAAGGAGCTTCCACAAGATTCTCGGACCTGAGTACTCACTACAGATAGAGACAGAAGTCATGGAACAGTTACTTGCAGCTGCATATGTCTCAGAAGGGGACATGGAAGTTGAGGATTGGGTGGAGCAAGTTCTCAGTGGAGGATTTACAGAGATACAGAGAAGGTACAGCCTCTCTGCTCGTTCTATTGTGAAACTTGCTACATGTCAGGAGCAAGATCCTGGTGTGTTCCTTCTTCCCCCAAGGATAATCATAGACTGA 3267 0.4527 MPTPVGVAKHCLTQDAARALEEAVSVARRRGHPQTTSLHAVSALLSLPSSTLRDACARARNCAYSPRLQFKALELCLSVSLDRVPSTQVADDPPVSNSLMAAIKRSQASQRRQPDNFNIYNQISPQPTSVSCVKVELQHLILSILDDPVVSRVFGEAGFRNSEIKLAILRPLPQLLRYSRSRVPPIFLCNLTEHPDPGRRSFSFPFPGSFGTCDGGADNYKRIGDVLCRSRGRNPLLLGVCADDALHSFTEDVNKQRDVALPVELSGLRVICIGKDISKFVFENCDNETFSSRLKEIAETIEQGVGPGLVVNFGDLKYLIDENASNEAVNYIVAELAKLLELNYGKFWLMGVAASYESYLTFMARFPSIEKDWDLQILPITSTRPQDESYQRPRYSLMDSFVPFGGLFSSPSDLKGPLQGSYYCVPRCLQCGESCVQEVLPASNERLSALAADPYHSDLPPWLRAAHLGITKGLNDKTKEDNVRLDTSETGPIKKLDKTCQHLHNSQQSSEAIQCQSVMSSRCSDGEKEDVDNHSNKFSDASPGGVHIDLNSSVPLAEETISTPHSSSPVPAGSKEKPEKHISKALEMFRKAENLESGDLRSCNMSNSSMCDGSQLSPSSVTSVTTNQGTGICISRTSNKSQKPTMGSPKEIANPLSPNHNFVNRDVFKHPAQSSSCLSSDHSGQYDLRNPKTIFEALAKKVTGQDEALQSIVKTISYCETSRGKCLGGSQREGIWMNFVGTDRIGKRKIAVSLAEILYGSQESFISVDLNSEEINGHDVKFRGKTIVDVLVGELSKNPLSVVFLDNVDKADMMDQNSLSQAVQTGKIIGSCGREVGVNNAIIVTSFSVQEDNLNCTPKTEFSSYSEERVLRTKGTPIKMKVEHVIGDIRSPSLAVLKCSTEAIPNPILVNKRKLSGDNALNGQHKSSEMAKRAHKISNCFLDLNVPAEENELQFMDDGNPEGVLTAKPNPWLQELYNQVDGTIILKPYNFDALADKVLKIIRRSFHKILGPEYSLQIETEVMEQLLAAAYVSEGDMEVEDWVEQVLSGGFTEIQRRYSLSARSIVKLATCQEQDPGVFLLPPRIIID 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01398 1088 SUPERFAMILY Double Clp-N motif 12 117 IPR036628 -
Accr3g01398 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 686 849 IPR027417 -
Accr3g01398 1088 MobiDBLite consensus disorder prediction 632 657 - -
Accr3g01398 1088 Gene3D - 10 170 IPR036628 -
Accr3g01398 1088 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 3 1054 - -
Accr3g01398 1088 MobiDBLite consensus disorder prediction 523 580 - -
Accr3g01398 1088 Gene3D - 665 889 IPR027417 -
Accr3g01398 1088 ProSiteProfiles Clp repeat (R) domain profile. 7 174 IPR004176 -
Accr3g01398 1088 MobiDBLite consensus disorder prediction 555 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01398 Accr-Chr3 15844103 15850025 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01398 - - gmx:100786125 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01398 3 15844103 15850025 Accr3g01398 3 15844103 15850025 CCT
Accr3g01398 3 15844103 15850025 Accr3g01398 3 15844103 15850025 ECH
Accr5g02103 5 47378055 47381228 Accr3g01398 3 15844103 15850025 ECH
Accr4g01508 4 15332585 15337331 Accr3g01398 3 15844103 15850025 ECH
Accr3g02144 3 38257096 38261459 Accr3g01398 3 15844103 15850025 ECH
Accr3g01398 3 15844103 15850025 Accr4g01508 4 15332585 15337331 ECH
Accr3g01398 3 15844103 15850025 Accr3g02144 3 38257096 38261459 ECH