Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02144 ATGCCGACGTCGGTCAACGCAGCTAGGCAATGCTTGACGGAGGAAGCGGCGCGTGCTCTTGACGATGCGGTGGCAGTTGCTCGTCGCCGCAACCACGCGCAGACTACCTCGCTTCACGCTGTATCTGCCTTGCTTGCTTTGCCGTCCTCCAAGCTCCGGGAAGCTTGCACACGCGCCGGGAGCTCCTGCTACTCGCCGCGGCTCCAGTTAAAAGCTCTAGAACTTTCCGTCGGTATCTCGCTAGACCGGTTATCTACTTCCAAAGAACTCGAGGATGATCCTCCTGTGTCAAATTCTCTCATGGCCGCCATCAAACGGTCCCAAGCTAACCAGAGGAGGCATCCGGAGAACTTCCATTTGTTTCAGATGCATAGTCTGCAGAATCAGCAGCAGCCAACGGCGTCGTTATTGAAAGTCGAACTCAAGCACTTCGTATTATCAATTCTCGATGATCCAATTGTGAGTAGGGTTTTTGCCGACGCCGGATTTAGGAGTTGCGATGTCAAGCTCTCGTTGCTTCAGCCGCCGGTGACACAAACTTCTCGGTTTTCCCGGAGCCGGTGTCCGCCCATTTTCTTGTGCAATTTGCCCGGTTCCGAATCGGGTCCACCCGGTTTCAAGTTTCCTTTCATGGGATGTTCTGGAAACGAAAGCTTGGATGGGAATTGTAGAAGAATCAGGGAGGTTCTTGTTAGAAAAACGAGGAGAAACCCCTTGTTGATGGGCATTTACGCAAAAAATGCTCTCCGGAGTTTTACAGAATCAGTACAGAAATGTCGAGAGGGAGTGCTGCCAGCTGAAATAGCTGGGTTGAATATACTCAGCATTGAGAAGGAAATTTCTGAGACTCTTAGTGAAGCTAAAAGTGAAGAGAAGATGGGTTTGAAATTTCAGGAACTGAGTCGTTCATTGGATCAATGCTCTGGTCCAGGTATTGCGGTGAACTTCGGAGAGCTTGACGAGTTCGTGCGTGATGGCGTGCCTCGTGGTGCTGCGAACTTTGTTGTTTCACAGTTGACAAGGTTATTGAAAGTTCATGGTGAGAAAATTTGGGTTGTTGGGGTAGCTGGAACCTCAGATGTGTATTCTAAGTTTGTAGCTCTGTTTCCAACTATAGAAAAGGATTGGGATCTATATCTACTCACTATCACATCTACCACTCCTTCAATAGAAGGACTCTACCCTAAGTCCAGCTTGATGGGGTCCTTTGTTCCTTTTGGTGGGTTCTTCTCTTCACCTTCTGAATTCAAAAGCCCGCTAAGCTGTACAAATCAAAGTTTTACGCGATGTCACTCCTGTGATCAAAAGTATGAACAAGAAGTCGCTGATATTCTAAAAGTAGGTCCAGTGACTTCGGCATGTGGTTCCCCCACAAGCTTGCCTTGGTTACAAAAAGCTAGTGTAGAGATAGATCAAGGATTGGACGTGGAAAAGAGTAATGAAGAAAATGCAAGTATGGGTGCCAAGATCTTTGGATTGCAAAAGAAATGGAATGACTTTTGTGAAAGACTTCATCAAACCCGGTCAACACCTGAAGTTGTTACATCCCGAACAGTGTCCAAAAATCCAATCCTTGGGGGCTTCCCATTTAGTTCAAGTTTAAAAGAAAGTAGCTGTAAGCATCCATCTTCAAATGAAAGCCAATATTCTCATGATGTTGCTAGTGTTCCTAGTTCATCTGACCAGGTTGCTAAAGTTTCAGAGATTCAGCACACTGATAAGCTCCCTTGGATTAACCCTTCCTCTAAGACCAGTACTATGGTTGATGGTAGATCATCTTCTTCCCTTGCTTCTGTGACAACAGATTTGGGATTGGGGACAATATATGCATCAGCTGCTCCGGAGCCAAATACCCAGGAACTCCAAAATCATGAAGAGCGCCTTCAGGATTTGAATGATGATAATGATATAAACCAAATTGCCGGATCCTCTTCATGCCCTGGTCCCAGTTTGGAAGGGAACTTTAGCTCAGTAGATTTCAAGTCTCTTAGTCAAGTTCTCACTGAGAGGGTTGGATGGCAAGATGAGGCCATATCTGCTATCATTCAAACCTTGTCCCTTTGCAAGTCTGGCAGAGGAAAGCATCATAGCATACATGATAGAACAGATATATGGTTTGCTTTCCTCGGACCCGACAGATTTGGGAAGAGAAAAATTGCTTCAATACTTGCGAAGGCAATATTTGGAAACACAGAAAGCCTGATCTCTTTGGATTTGAATTCCCGGGACAGGGCTTACCGACTAAACTCAATATTTGAAAGCCAGAATTCGAATTGTTACGACCTCAGGAGGAAAACAGATGTGGGCTTTATCGCTGGGGAGTTGAGTAAGAAGCCCCATGCAGTTGTCTTTCTTGAAAATGTAGATAAAGCTGATCTTTTGGTGCAGGAAAGTTTGTTTCAGGCACTGAGAACTAGTAAATTTCCAGACTCACATGGAAGGAAAATCAGCATTCATAATGCAATATTTATTGTAAGCTCAACTGTCTCTAAAGGTAATGATGGCACTTTCCTTTCAGAAAGGGAACCTGCAATGTTTTCTGAGGAAAGAATCCTTGAAGCTAAAAGATTTCAAATGCAATTACTACTGAGAGATATTTCTGAGGATGCAAAAGGAAGCTGTGGTCCAAATGTTGTTGTTACACCAAGAAAGGGGTCCTCTAAACAGACATTTCTGAACAAAAGAAAAGAGATTGAAATCAGTGACGACCAACAGCAAGCAACAAGCAGCAAGATACAGAAACAAGTACAAGACTCATCGAGATCCTTTTTGGATCTAAATGTGCCTGTAGAGGAGGTTGAAGATGACATGGATCATAATGACAATGCGAGTCAATCCAGACATGAAGGCTCTCAAGCCTGGTTAAATGATTTCTGTGATCAAACTGATGAAAACGTGGATTTCAAGCCATTAAATTTCGACATGCTTGCGCAGAAAATACTAAAAAGCATCAGCACACGATTCGAAAGGGCATTCGGATCACAATTTCTGCTGGAAATCGATTACGAAGTAATGACACAAATACTCGCAGCCGCCTGCTTATCAGACGAGGGAAATGCAGTGGAGGATTGGATTGAACATGTGCTTGTCAAAAGCTTAAATGAAGCCAAGAAGAAATGTCACCCCTCAAATAAGTTTGGAATGAAACTAGTTCCCTGTGAAGGCATTCTTGTGGAAGAGCAAGTTCCTGGAGTGTGCCTTCCAGCAAGAATTAACTTGAACTAA 3225 0.4431 MPTSVNAARQCLTEEAARALDDAVAVARRRNHAQTTSLHAVSALLALPSSKLREACTRAGSSCYSPRLQLKALELSVGISLDRLSTSKELEDDPPVSNSLMAAIKRSQANQRRHPENFHLFQMHSLQNQQQPTASLLKVELKHFVLSILDDPIVSRVFADAGFRSCDVKLSLLQPPVTQTSRFSRSRCPPIFLCNLPGSESGPPGFKFPFMGCSGNESLDGNCRRIREVLVRKTRRNPLLMGIYAKNALRSFTESVQKCREGVLPAEIAGLNILSIEKEISETLSEAKSEEKMGLKFQELSRSLDQCSGPGIAVNFGELDEFVRDGVPRGAANFVVSQLTRLLKVHGEKIWVVGVAGTSDVYSKFVALFPTIEKDWDLYLLTITSTTPSIEGLYPKSSLMGSFVPFGGFFSSPSEFKSPLSCTNQSFTRCHSCDQKYEQEVADILKVGPVTSACGSPTSLPWLQKASVEIDQGLDVEKSNEENASMGAKIFGLQKKWNDFCERLHQTRSTPEVVTSRTVSKNPILGGFPFSSSLKESSCKHPSSNESQYSHDVASVPSSSDQVAKVSEIQHTDKLPWINPSSKTSTMVDGRSSSSLASVTTDLGLGTIYASAAPEPNTQELQNHEERLQDLNDDNDINQIAGSSSCPGPSLEGNFSSVDFKSLSQVLTERVGWQDEAISAIIQTLSLCKSGRGKHHSIHDRTDIWFAFLGPDRFGKRKIASILAKAIFGNTESLISLDLNSRDRAYRLNSIFESQNSNCYDLRRKTDVGFIAGELSKKPHAVVFLENVDKADLLVQESLFQALRTSKFPDSHGRKISIHNAIFIVSSTVSKGNDGTFLSEREPAMFSEERILEAKRFQMQLLLRDISEDAKGSCGPNVVVTPRKGSSKQTFLNKRKEIEISDDQQQATSSKIQKQVQDSSRSFLDLNVPVEEVEDDMDHNDNASQSRHEGSQAWLNDFCDQTDENVDFKPLNFDMLAQKILKSISTRFERAFGSQFLLEIDYEVMTQILAAACLSDEGNAVEDWIEHVLVKSLNEAKKKCHPSNKFGMKLVPCEGILVEEQVPGVCLPARINLN 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02144 1074 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1038 - -
Accr3g02144 1074 MobiDBLite consensus disorder prediction 903 920 - -
Accr3g02144 1074 Pfam AAA domain (Cdc48 subfamily) 705 831 IPR003959 GO:0005524|GO:0016887
Accr3g02144 1074 SUPERFAMILY Double Clp-N motif 12 117 IPR036628 -
Accr3g02144 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 839 IPR027417 -
Accr3g02144 1074 Coils Coil 621 641 - -
Accr3g02144 1074 Gene3D - 10 174 IPR036628 -
Accr3g02144 1074 ProSiteProfiles Clp repeat (R) domain profile. 8 180 IPR004176 -
Accr3g02144 1074 MobiDBLite consensus disorder prediction 901 920 - -
Accr3g02144 1074 CDD RecA-like_ClpB_Hsp104-like 659 827 - -
Accr3g02144 1074 Gene3D - 647 879 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02144 Accr-Chr3 38257096 38261459 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02144 - - pcin:129303532 1658.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01508 4 15332585 15337331 Accr3g02144 3 38257096 38261459 CCT
Accr3g02144 3 38257096 38261459 Accr3g02144 3 38257096 38261459 ECH
Accr3g02144 3 38257096 38261459 Accr3g01398 3 15844103 15850025 ECH
Accr4g01508 4 15332585 15337331 Accr3g02144 3 38257096 38261459 ECH
Accr3g01398 3 15844103 15850025 Accr3g02144 3 38257096 38261459 ECH
Accr5g02103 5 47378055 47381228 Accr3g02144 3 38257096 38261459 ECH