Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1249 ATGCCGACACCGGTCAGCGTAGCAAGGCAATGCTTGACGGAGGACGCCGCTCGCGTTTTGGACGATGCGGTGGCGGTTGCTCGCCGCCGCAACCATACGCAGACAACTTCACTTCACACTATCTCTGCCTTGCTCGCCTTGCCTTCTTCCCCTCTCCGGGATGGTTGCACTCGCGCGCGTAGTTGCTCATATTCTCCGCGTTTACAATTCAAAGCTTTAGAGCTCTCTGTGGGTGTGTCTCTCGACCGATTGCCTACAACTAAGACTCTCGAGGATGACCCTCCGATATCCAATTCACTCATGGCGGCTATTAAGCGGTCCCAAGCGAACCAGAGGAGGCATCCAGAGAGTTTTCATTTGATACAGATGCATATGCATCAGCAGCAGCAAGCGGCGTCGTTTCTGAAGGTGGAGCTCAAGCACTTCATTCTGTCCATTCTCGATGATCCGATTGTGAGCAGAGTTTTTGGGGATGCTAATTTTCGAAGCTGTGACATCAAGCTTGCATTGCTTCAGCCGCCTATAGCGCAAGCTTCTTCTCGATTCTACCGGGGCCGTTACCCACCTTTATTTTTGTGCAATCTAACAGGTTCCGAAATGGATCGTCCTGGTTTCAACTTCCCTTTCATGGCGAATCCTGGTCAGAAAGATGAAGACGAGAATTGTAGAAGAATTGCGGAGATTCTTGTGAGGAAGACAAAGAAGAATCCCTTACTGATGGGTGTTTACGCGAAGGGTGCTCTTAGGAGATTCACTGACACTGTACAGAGAGGTCGAGTGGGTATGTTGCGGGCTGATATCGCTGGTCTTAATATGATTTGCATTGAGAAGGAGATTGCTGAGAGTTTTGTTGAAGGTTGTAGTGAAGAGAAGATGGGTTTGAAATTTAAGGAATTGAGTCGTGCAGTCGAGCAGTGCTCAGGTCCGGGTATCGTTGTGAATTTTGGAGAGCTTGAGGCATTCTTGGGGGATGGTGTGCCTGGCGTTGCTGTGAATTTTGTGGTCTCACAACTGACAAGCTTATTGGAAATCCATGGCGAGAAATTATGGTTGGTAGGCATGGCAGGAACCTCCGTTGTATATTCCAAGTTTTTAACTATGTTCCCAACTGTGGAAAAGGATTGGGATCTGCATCTGCTGACCATGACATCTGCCTCCCCTTCAGTCGAAGGGCTTTACTCTAAATCCAGTTTGATGGGGTCCTTTGTGCCATTTGGTGGTTTCTTTTCTACACCACCTGAATTCAAAAACTCAGTAAGCTTTACAAATCAATCTTCTGCAAGCTGTCATGCATGCAATGAGAAGTATGAACAAGAAGCTGCTGATATTTTGAAGGTAGACCCTGCAACTTCAGCATCTAGTCACTCAACGATCATCCCTCAGGTGCAACAGGTTAATGTGGATAAAGATAAACGATTGGATGTTGCAAAGACTAATGATGAATTCACAAGTTTGAGTGCTACTACGTTGGGATTGCAAAAGAAGTGGACTGATAATTGTCAGCGTCTTCATCACAACGAGTCATTTCCTGACTTAAATATATCCCAAACAAAGGCTCAACTTCCCTCTCTTGATGGCTTACCATTTGGTTTGGGTTTTAGAGAAAGCAGTAGTAATAAAGATCTATCAGTTGATCAAATTCAACATTCTAAATATGGTCTCTACATGCCTAAAGAGTTACCTAGTATTTACCCATCAAAGCAGATGTTACATGTTTCTTCAGAAACTTCAGGCATTCATACAGGAACTGACAAGGGAGCAGTTGGTTCAAAGAGTCAGCAAACTGACGTGCAGAGCCCTTGGGTTGCCCCTTCTCCTGGGGCCAATATGAGTCAGATTGATCACAGATCTTCCTCCTCCCTTTCTTCTGTGACCACTGATTTGGGATTAGGAACACTATATGTATCAGCAGCTCAGGAGCCAAATACTCCAAAAGTACAAGATCATAGAGAGAGTATACACCACTTTTCGGACTCCATTTCAGCCGATCTTGATGTTGTGAATGAAAATACTTCTCACCACATTGCTCAATCCTCTCCTTGCTCTGGTCCCATGGAAGGGAAACCAGATTCACTAGATTTCAAGTCACTTAACCAGCTTCTTACTGAAAGAGTTAGCTGGCAAGCAGAGGCTATATTTGCCATCAACCGAACCATGTCCCTTTGTAGATGTGGCACCGGAAAGCATAGTGGTTCACATGCTAGAGCGGATGTATGGCTTGCTTTCCTTGGACCTGATAGAGTTGGAAAGAAGAAAATTGCTCTAGCACTTGCAGAGATAATATTTGGAAACACAGAAAGGCTAATCTCTGTGGATATGGGTTCCCAAGACACAGGCTACCCATTAAATGTGGTTTCTGAATGTCAAAAGTCAATAGGTCATGACGTGCTTAGGAGGAAGACAACCGTGGACTACATTGCTATGGAGTTGAACAAACAACCCCATTCAGTTGTGTTTCTTGAAAATGTAGATAAAGCTGATTTTCTGGTGCAGAATAGTTTGCTCCAGGCTATAAGAACAGGTAAATTTCCAGACTCACATGGCAGGGAAATCAGCGTCAATAATGCAATCTTTATTGTAACTTCAAGTGTCTTCAAAGGCGAGCACCCTTTCCTTTTGGAGGAGGAGCATGTGTTTTCTGAAGATAAAGTCCTTGAAGCCAAAAGATGTCAAATGCAGTTATTACTCGGACATTCCTCTGAGGATACCATAAGAAGCAGTGACACAAATGTCAGAATAACTCTGGGAAGAGAGGCTTCCAAACCAGCATTTCTGAACAAAAGAAAACTAAGTGAAAGAAGTGACTCTATAGAACAGGAAACCAAATGCAAGGTACAGAAACAGGTCTTAGAGACATCAAGATCCTTTCTAGATTTGAACATGCCTCTCGAGGAGGTTGAAGAGGACTGGTTCGATGACTTCTGCAGTCAACTTGATGCCAGAATAACTTTTAAGCCCTTCGATTTTGATGCACTTGCTGAGAAAATCTTAAAGAGCATCAGTTCACAGTTTCAGAATACATTTGGATTACAGTTTAAGCTGGAGATTGATTATGAAGTCATGGTACAGATCCTAGCAGCCGCTTGGTTATCTGACAAGAAAAATGCTGTGGAGGATTGGATTGCAAATGTACTGGGCAGAATCTTCAATAAAGCCTTGCAGAAATACCAACCTGAACCTCAGCATTCCATGAAACTAGTTACCTGTGAAGGGATTTTAATGGAAGAACAAGCTCCTGGAGTCTGTCTTCCTGCCAATGTTAACCTCAAGTAA 3273 0.4409 MPTPVSVARQCLTEDAARVLDDAVAVARRRNHTQTTSLHTISALLALPSSPLRDGCTRARSCSYSPRLQFKALELSVGVSLDRLPTTKTLEDDPPISNSLMAAIKRSQANQRRHPESFHLIQMHMHQQQQAASFLKVELKHFILSILDDPIVSRVFGDANFRSCDIKLALLQPPIAQASSRFYRGRYPPLFLCNLTGSEMDRPGFNFPFMANPGQKDEDENCRRIAEILVRKTKKNPLLMGVYAKGALRRFTDTVQRGRVGMLRADIAGLNMICIEKEIAESFVEGCSEEKMGLKFKELSRAVEQCSGPGIVVNFGELEAFLGDGVPGVAVNFVVSQLTSLLEIHGEKLWLVGMAGTSVVYSKFLTMFPTVEKDWDLHLLTMTSASPSVEGLYSKSSLMGSFVPFGGFFSTPPEFKNSVSFTNQSSASCHACNEKYEQEAADILKVDPATSASSHSTIIPQVQQVNVDKDKRLDVAKTNDEFTSLSATTLGLQKKWTDNCQRLHHNESFPDLNISQTKAQLPSLDGLPFGLGFRESSSNKDLSVDQIQHSKYGLYMPKELPSIYPSKQMLHVSSETSGIHTGTDKGAVGSKSQQTDVQSPWVAPSPGANMSQIDHRSSSSLSSVTTDLGLGTLYVSAAQEPNTPKVQDHRESIHHFSDSISADLDVVNENTSHHIAQSSPCSGPMEGKPDSLDFKSLNQLLTERVSWQAEAIFAINRTMSLCRCGTGKHSGSHARADVWLAFLGPDRVGKKKIALALAEIIFGNTERLISVDMGSQDTGYPLNVVSECQKSIGHDVLRRKTTVDYIAMELNKQPHSVVFLENVDKADFLVQNSLLQAIRTGKFPDSHGREISVNNAIFIVTSSVFKGEHPFLLEEEHVFSEDKVLEAKRCQMQLLLGHSSEDTIRSSDTNVRITLGREASKPAFLNKRKLSERSDSIEQETKCKVQKQVLETSRSFLDLNMPLEEVEEDWFDDFCSQLDARITFKPFDFDALAEKILKSISSQFQNTFGLQFKLEIDYEVMVQILAAAWLSDKKNAVEDWIANVLGRIFNKALQKYQPEPQHSMKLVTCEGILMEEQAPGVCLPANVNLK 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1249 1090 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Acco10g1249 1090 Gene3D - 684 986 IPR027417 -
Acco10g1249 1090 ProSiteProfiles Clp repeat (R) domain profile. 8 178 IPR004176 -
Acco10g1249 1090 MobiDBLite consensus disorder prediction 574 599 - -
Acco10g1249 1090 CDD RecA-like_ClpB_Hsp104-like 693 872 - -
Acco10g1249 1090 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 852 866 IPR001270 GO:0005524
Acco10g1249 1090 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 819 837 IPR001270 GO:0005524
Acco10g1249 1090 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 740 758 IPR001270 GO:0005524
Acco10g1249 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1027 IPR027417 -
Acco10g1249 1090 Pfam AAA domain (Cdc48 subfamily) 740 864 IPR003959 GO:0005524|GO:0016887
Acco10g1249 1090 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1049 - -
Acco10g1249 1090 Gene3D - 10 173 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1249 Acco-ChrAcco10 26391154 26395644 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1249 10 26391154 26395644 Acco05g0748 05 12078697 12083054 CCT
Acco10g1249 10 26391154 26395644 Acco10g1249 10 26391154 26395644 ECH
Acco10g1249 10 26391154 26395644 Acco05g1586 05 32239943 32245622 ECH
Acco10g1249 10 26391154 26395644 Acco05g0748 05 12078697 12083054 ECH
Acco05g1586 05 32239943 32245622 Acco10g1249 10 26391154 26395644 ECH
Acco06g0988 06 6622252 6625501 Acco10g1249 10 26391154 26395644 ECH