Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
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Select Orthogroup Total Tree Image Download Acco Accr Adu Aed Aev Ahy Aip Alju Amo Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Eupl Glsi Gma Gso Lal Lan Lapu Lasa Lele Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pte Pumo Pvu Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra Vvi
OG0000060 966 6 5 21 16 9 61 22 4 37 9 16 4 0 26 3 3 12 4 2 16 0 19 8 0 3 13 15 11 7 38 42 37 1 53 24 28 7 14 8 4 18 21 13 30 10 8 21 24 68 51 6 8 24 23 18 9 6
OG0000061 952 0 8 7 0 10 72 27 2 5 1 30 2 0 58 28 0 0 0 0 3 0 6 2 9 2 5 47 0 4 36 0 108 4 6 1 0 51 9 7 0 0 1 5 126 0 0 77 12 26 40 1 32 20 17 45 0 0
OG0000062 950 1 2 7 2 4 12 7 1 13 26 8 0 3 8 8 17 5 6 0 11 1 16 34 1 7 7 15 4 20 22 12 193 0 43 2 9 10 18 11 0 9 10 20 49 8 24 4 39 61 54 6 38 7 22 19 4 10
OG0000063 942 24 17 23 9 6 54 40 20 25 16 15 33 12 20 3 6 9 13 15 2 18 13 14 5 7 7 7 25 7 8 10 71 7 18 4 4 83 3 5 8 20 2 16 12 5 6 24 7 21 28 9 12 32 21 10 16 15
OG0000064 938 13 16 13 15 12 27 12 13 20 14 15 17 12 15 13 14 14 13 13 7 14 23 25 21 22 15 13 33 14 15 14 55 12 14 18 15 21 8 10 24 14 15 17 29 14 15 10 13 27 14 10 13 12 22 24 8 7
OG0000065 938 12 7 22 12 4 50 19 13 39 8 28 10 3 7 6 9 13 5 2 0 22 13 11 12 15 19 16 24 9 9 16 86 14 16 11 11 11 15 15 6 31 17 21 35 15 13 24 8 22 12 15 21 20 24 32 1 7
OG0000066 936 5 9 6 5 4 15 6 4 16 1 6 36 20 42 9 3 2 15 8 3 5 7 8 8 4 1 1 21 1 29 15 124 23 53 7 2 39 3 2 20 14 2 23 27 3 5 13 32 94 38 3 9 2 4 20 2 57
OG0000067 936 2 9 5 3 7 54 6 1 21 3 26 2 2 3 6 1 0 0 2 2 2 1 5 0 0 1 200 1 0 20 0 31 0 50 0 1 14 0 5 0 0 4 48 50 0 0 6 53 36 38 10 19 28 29 115 14 0
OG0000068 917 0 0 4 0 5 54 13 0 75 0 46 0 0 1 7 3 0 15 1 0 1 1 0 17 4 0 52 0 6 42 13 84 0 24 2 0 0 36 1 0 4 1 4 92 0 2 56 15 45 7 0 59 0 16 109 0 0
OG0000069 916 15 9 18 22 6 35 28 7 18 10 16 0 2 9 8 11 2 2 2 2 3 34 18 1 1 17 4 16 12 13 26 139 19 25 8 13 26 8 13 1 19 12 22 40 10 12 11 18 43 28 11 6 13 22 15 6 9
   
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